Pmne039535.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000089.1:11663636-11665309[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-07 3.7e-05 25.3 0.1 16 40 28 52 16 56 0.84
Sequence Information
- Coding Sequence
- ATGGTTAACAACTACATACGGAAGACCTCTAGGGCCTCTTGGTCGGAGGAAATAATGAAAACAGCAATTGTAGAAGCAAAAAAATCCTCAATAAAAAGTGCATCTCAAAAATATGGAATACCGTATACTACGCTGCAACGTCATGTAAAATCTAATAGTAGTATAAAGAGTCTTCGCAGTTTTAAGCCTGTATTTAATGAAGAGCAagagaaaattttagaaaaacatTTAAGGGATCTAGATGCACTGTTTTACGGTCTGTCGAGAAATGAGTTTAAGGAATTAGCTGGTGAGTATGCTAAGCGACAGAATATACAAACgccatttaaaaacaatattgccGGTAAACAGTGgtttaaaaattttttaaaacgtCATCCCGATATTGTTTTAAGAAGCCCAGAGCCGACATCGGTAGCCAGATTATCAGCTTTTAACAAACCAGCTGTGACCCGATTTTATGATTTGTTGGAGACCATTGTCCAAGAGTATCATATCACTCTTAATATGATATACAACATGGATGAGACAGGTGTGAGGACCTCGTCTACAAAACCACCAAAAGTACTTTCAGTACTTGGTAAGAAGCAGGTCGGCATGGTGAGCAGCTTAGAGAGGGGTACTTTAACAACAGTAATCTGCTGCTGTGGCGCAACAGGCTGTTACGCACCTcccccattttttatttttaaaagaaaaaggttTCAGCCACGTCTACTAGATGGGGCATGTCCTGGTAGTGAAGGCACCATATCAGATAGTGGATGGGTAAGCGGAGCAATTTTCTTAGAGTGGCTAATAGCTTTTGTGAGTTACGTGCGTCCTACGAGTGAATGTAAGGCTTTATTAATTCTAGACAATCATGAGTCTCATAAATTTTATCCTGCTTTAGAATATGCAAGAGATCATAACGTTATATTTTTGTCTATTCCTCCACACACATCTCATAAGTTACAGCCACTTGATGTTGCTGTCTATGCACCATTTAAGGTGGCTTTTGAAATTGAGATAAATAAGTTCCAAAAGCAGTATCCAGGGCGAGTTATTTCGCAGTATGAAATTGTACGTCTCGTTACACCTGCTTACTTAAAAGTAGCAACACCAAAAAACGCCATGAGCGGATTTAGAGCAGCCGGAATTTATCCGTACGATAGAAATGTGATAGATGAAGCACTATTCGCACCTTCTACTGTCTACGAGGCATCAATTTCACACTCTGCAGGCGAAGACCACAGGACTCCCACGCCTTCTCAATTAGAAACAACTGTTTCACCTATGACAACAGATACGATCGCCATACCACATGCTTCAAAAACACCACACATTCTGTTCACTGTACCACCAGATGAAATTACTTCACTAGTTTTGACGACACCACCTATTTtggcacacgtacacacacacgagATCATTCCTCCAGAACAGACAACACCTGTTTTGAAGACTCCAGAAAAGACCCAATCTACGTTGACAGCTCCACACATTCCCACAGTACCAAAAACCATTGATTATTTTACTTCATCCAGCGCGGAAATACTCAAAGAAATTCATCCATTGCCCCAGCAACAGTTTAAAAAACAAAGTAGGGGtagaaaattacaaaaatctgAAATATTAACCAGCACACCTGTAAAAACCATACAagaagataaatttaaaaaaaacaagttttaa
- Protein Sequence
- MVNNYIRKTSRASWSEEIMKTAIVEAKKSSIKSASQKYGIPYTTLQRHVKSNSSIKSLRSFKPVFNEEQEKILEKHLRDLDALFYGLSRNEFKELAGEYAKRQNIQTPFKNNIAGKQWFKNFLKRHPDIVLRSPEPTSVARLSAFNKPAVTRFYDLLETIVQEYHITLNMIYNMDETGVRTSSTKPPKVLSVLGKKQVGMVSSLERGTLTTVICCCGATGCYAPPPFFIFKRKRFQPRLLDGACPGSEGTISDSGWVSGAIFLEWLIAFVSYVRPTSECKALLILDNHESHKFYPALEYARDHNVIFLSIPPHTSHKLQPLDVAVYAPFKVAFEIEINKFQKQYPGRVISQYEIVRLVTPAYLKVATPKNAMSGFRAAGIYPYDRNVIDEALFAPSTVYEASISHSAGEDHRTPTPSQLETTVSPMTTDTIAIPHASKTPHILFTVPPDEITSLVLTTPPILAHVHTHEIIPPEQTTPVLKTPEKTQSTLTAPHIPTVPKTIDYFTSSSAEILKEIHPLPQQQFKKQSRGRKLQKSEILTSTPVKTIQEDKFKKNKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158812;
- 90% Identity
- iTF_01156357; iTF_01156359; iTF_01156360;
- 80% Identity
- -