Pmne035706.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000087.1:20204777-20205898[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.6e-08 2.2e-05 26.0 0.2 16 40 28 52 16 56 0.83
Sequence Information
- Coding Sequence
- ATGGTTAACAACTACATACGGAAGACCTCTAGGGCCTCTTGGTCGGAGGAAACAATGAAAACAGCAATTGTAGAAGCAAAAAAATCCTCAATAAAAAGTGCATCTCAAAAATATGGAATACCGTATACTACGCTGCAACGTCATGTAAAATCTAATAGTAGTATAAAGAGTCTTGGCAGTTTTAAGCCTGTATTTAATGAAGAGCAagagaaaattttagaaaaacatTTAAGGGATCTAGATGCACTGTTTTACAGTCTGTCGAGAAATGAGTTTAAGGAATTAGCTGGTGAGTATGCTAAGCGACAGAATATACAAACgccatttaaaaacaatattgccGGTAAACAGTGgtttaaaaattttttaaaacgtCATCCCGATACTGTTTTAAGAAGCCCAGAGCCGACATCGGTAGCCAGATTATCAGCTTTTAACAAACCAGCTGTGACCCGATTTTATGATTTGTTGGAGACCATTGTCCAAGAGTATCATATCACTCCTAATATGATATACAACATGGATGAGACAGGTGTGAGGACCTCGTCTACAAAACCACCAAAAGTACTTTCAGTACTTGGTAAGAAGCAGGTCGGCATGGTGAGCAGCTTAGAGAGGGGTACTTTAACAACAGTAATCTGCTGCTGTGGCGCAACAGGCTGTTACGCACCTcccccattttttatttttaaaagaaaaaggttTCAGCCACGTCTACTAGATGGGGCATGTCCTGGTAGTGAAGGCACCATATCAGATAGTGGATGGGTAAGCGGAGCAATTTTCTTAGAGTGGCTAATAGCTTTTGTGAGTTACGTGCGTCCTACGAGTGAATGTAAGGCTTTATTAATTCTAGACAATCATGAGTCTCATAAATTTTATCCTGCTTTAGAATATGCAAGAGATCATAACGTTATATTTTTGTCTATTCCTCCACACACATCTCATAAGTTACAGCCACTTGATGTTGCTGTCTATGCACCATTTAAGGTGGCTTTTGAAATTGAGATAAATAAGTTCCAAAAGCAGTATCCAGGGCGAGTTATTTCGCAGTATGAAATTGTACGTCTCGTACAACACCAAAAACCAAAACCAACCAAAAAACGCCATGAGCGGATTTAG
- Protein Sequence
- MVNNYIRKTSRASWSEETMKTAIVEAKKSSIKSASQKYGIPYTTLQRHVKSNSSIKSLGSFKPVFNEEQEKILEKHLRDLDALFYSLSRNEFKELAGEYAKRQNIQTPFKNNIAGKQWFKNFLKRHPDTVLRSPEPTSVARLSAFNKPAVTRFYDLLETIVQEYHITPNMIYNMDETGVRTSSTKPPKVLSVLGKKQVGMVSSLERGTLTTVICCCGATGCYAPPPFFIFKRKRFQPRLLDGACPGSEGTISDSGWVSGAIFLEWLIAFVSYVRPTSECKALLILDNHESHKFYPALEYARDHNVIFLSIPPHTSHKLQPLDVAVYAPFKVAFEIEINKFQKQYPGRVISQYEIVRLVQHQKPKPTKKRHERI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01156331;
- 90% Identity
- iTF_01156329;
- 80% Identity
- -