Pmne042483.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000091.1:18021370-18021969[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.6e-08 1.9e-05 26.2 0.1 1 36 8 43 8 48 0.87
Sequence Information
- Coding Sequence
- ATGCTGCCCACAAAACATTATACGCCAGAACAAATGCGTCGTGCCATAGAGGCGGTCAAGAGAGAAGAAGCAGTGAGTGCAGCAGCATCTAAATATGGTGTACCTCGTATCACGCTTAGAAATAAGGTAACGGGGATAAGCCCTGCCGTTTGTTCAATGGGCCCAGCAACGATTCTTACGGTTCAAGAAGAGCAGATATTAGTACAATGGATTTTTGTACTAGCAGATCGACATTTTCCTATTTCACGAGAACAGTTATTGGACAGTGTccaacaaataataattaagaaCAAAAGGAAAACACCTTTTACTAACAATCGCCCTGGAAAGACGTGGTACCAAGCATTTCTTAAAAGACATCCTGAGATTTCGGAACGAAGTGCACAAAATCTAATAACATCACGAGATAATGTCACTGAACAACAAATCAAATCTTGGTTTACTGAGATCAAAAATTACCTTCAGGAGCAAAACCTTGAGCATTTGCTGAAACAACCTAGCAGGATATTTAATGCAGATGAAAGTGCATTTCTTTTCACCGAAATCTGGTCGTGTCTTAGTAAGACGGGATGGTTAGACTGTGTATACCGCATCTGGTAA
- Protein Sequence
- MLPTKHYTPEQMRRAIEAVKREEAVSAAASKYGVPRITLRNKVTGISPAVCSMGPATILTVQEEQILVQWIFVLADRHFPISREQLLDSVQQIIIKNKRKTPFTNNRPGKTWYQAFLKRHPEISERSAQNLITSRDNVTEQQIKSWFTEIKNYLQEQNLEHLLKQPSRIFNADESAFLFTEIWSCLSKTGWLDCVYRIW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158839;
- 90% Identity
- iTF_01156326; iTF_01158852; iTF_01158839;
- 80% Identity
- iTF_01156326;