Pmne022447.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius mnemosyne
Gene Symbol
-
Assembly
GCA_963668995.1
Location
CAVLGL010000081.1:15729724-15732256[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.5e-08 8.6e-06 27.3 0.0 1 40 18 57 18 61 0.92

Sequence Information

Coding Sequence
ATGGCTCCTccgaagaaaaaaataaataataataaaaaaaatgcaccATATACACAAGATACTATTAACAAGGCACTTAGAGATATTCGcgagaaaaaaaaatccattagaGAGGTCTGCCGAAATTATGGAATCCCTAGGACAACTGTCCAGGATCGAATATCTGGAAGAAGTAGTGATTCGATTAAAACGCGAGGTCCTGATCCTATACTAACCAGTGAAGTCGAAAAAAAAATCGTAGACTGGCTAATTGACATCGCAAAGTGTGGTCtccctataaaaaaatttgaattgcTAGACACTGTTCAGAAAATTATAAAAGACTCAGGCATGCAGACACCTTTCAAAAATGACCGTCCTGGACAAACCTGGTTTATAAACTTCATGAAAAGACATCCAGAAATTTCACAAAGATCCGCTGAAGGAATAAATAAGGCGAGAGCAAGAATAACAGAGGAGTCAATCAGACGCTGGTTTGGAGAGCTTGAATCGTTTCTAGTGGAAACAAATAATCGTGATATATTGGAATCTCCGGAACGTATATTTAATGGAGATGAGAGTGGATTCGCCGTTTGCCCCAAAACAGGAAAGGTTCTTGGTCCTCGAGGGTATCGCAATCTATACCAAATTAAAAGTGGTAGTGAAAAAGATAATTTAACTGTTTTGGTGACATTTAATGCTAAGGCACAAGTATGCCCACCACTAATAGTTTTTCCATATATTCGCCCACCAAAACAAATCGCAGATAGCATGCCACCACATTGGGTCCTTGGAAGGTCTGATAGTGGTTGGATGCGAAGTGATGTATTTTTTGAATATATTACGAATGATTTTAATAACTGGGTGGTGAGTAATGAAATACAAAGACCCATTCTATTACTGGTAGATGGACACAAATCCCATATGTCACTTGAGTTGAGCGGGATGTGTGAGCAAATGGGAATAATTCTTTACGCTCTGCCACCTAACACCACACACATACTCCAACCGGCAGATGTCAGTGTTTTTGGGCCTTTGAAATCGGAATGGAAAAATGTAGTAAGGAAGTTTTTGACGAAACCAGAAAATTTAAACTCTTCTGTTACCAAAACAAACTTTTGCGTTATTTTTAAAGATTGCCTGGAAAGTACAAATATGCCTCGAAATATAATAAATGGCTTCAGAAAATGCGGACTTTATCCATTTGATCCCAATGCAGTGGACTACTCGAAATGTGTACAGAATACCCTGGAAAAACTGAACAGTGATAATTCGAAGACACCACAAAGAAATATTTCCAAAGAGATAACTAACGCAGACCTAGAGATGAGGAAACTGAAAAGAAAGTCTGCTCAGATACAAATCGATGACGTTTTATACGAAACATGCTCTGAAGACCGAACGAACTCAACAGTCAATATTACGACATCTCAAATAATTgaagaagaaaataataatatgaccAGCCATGTAGATGATTTTAACACGAAAAAAATGGATTCTTTTGAAACCATTCCTCACAGCCAGACCAATGAAAACTTACTTCCCCAATTAAGTAATATAAGACCGCTAAATCCATTTAAGTCTCCAGAAAGTCTGTGCAACACAGACCAAGATCAAAGGACTTTAACCCACGATGTTCAGGTAACTAAGGATTCATCTACCGATGCATCAGAATCGTTAATTGATGACAATATATCATCATTGCATTTGTCAGGAAGTTATTTGGAAATTGGTTCTTTAGTATCGTTAGAGGATATACTTGTAATTCCAACTCAAATAAGCCAACCAACGACATCAATATTGAAAATTCCTGAAATGATAATAGATTCCAGTAATACAACAACCACTCAAAGCAGTACAATAATTACAATGATACCACCACCGGAAACACACATCATAACAAACAAGACCTCTAAAACTTTAGAAAATGTGCTGGTTAATATTCCGATAAAAGAGACTCTACAAACTAGTGAAACATCGACTTCAACACTATTACATACAGAATATAGAAATGCAATAGAAAAACACTTAGTTAAACCGGAACccgtaaaaaaatctatttaccgTATACGTACACCTTCATCTGCGGCAATTTCTTCTGCAGAGTGGcgaaaattttatgaagataaagagaaagttaaaatagagaagttagaattaagtaaaaaaaggcaagacattttgaaaaagaaaagaatagaaaAGGAAAAGTTAAAGAGTGCTAAAGTACAAACACGAAAAATTGCAAAATCAAagaattctataaagaaaaaggaAAGAGCAAGAGTAGATTGCGCCTTGTATcatgatattttaataagtgatacAGAAGAAGATTCGGAAAAAAATATTGGATGTGACTTTTGCACCACATGGTATCATTTGAGATGTACAGATTTTGTTGGACTAAAATATGAGGAAGTACAAAACAAACCTTTTAAATGCAATACTTGCATGTTTAATCGTGATTGA
Protein Sequence
MAPPKKKINNNKKNAPYTQDTINKALRDIREKKKSIREVCRNYGIPRTTVQDRISGRSSDSIKTRGPDPILTSEVEKKIVDWLIDIAKCGLPIKKFELLDTVQKIIKDSGMQTPFKNDRPGQTWFINFMKRHPEISQRSAEGINKARARITEESIRRWFGELESFLVETNNRDILESPERIFNGDESGFAVCPKTGKVLGPRGYRNLYQIKSGSEKDNLTVLVTFNAKAQVCPPLIVFPYIRPPKQIADSMPPHWVLGRSDSGWMRSDVFFEYITNDFNNWVVSNEIQRPILLLVDGHKSHMSLELSGMCEQMGIILYALPPNTTHILQPADVSVFGPLKSEWKNVVRKFLTKPENLNSSVTKTNFCVIFKDCLESTNMPRNIINGFRKCGLYPFDPNAVDYSKCVQNTLEKLNSDNSKTPQRNISKEITNADLEMRKLKRKSAQIQIDDVLYETCSEDRTNSTVNITTSQIIEEENNNMTSHVDDFNTKKMDSFETIPHSQTNENLLPQLSNIRPLNPFKSPESLCNTDQDQRTLTHDVQVTKDSSTDASESLIDDNISSLHLSGSYLEIGSLVSLEDILVIPTQISQPTTSILKIPEMIIDSSNTTTTQSSTIITMIPPPETHIITNKTSKTLENVLVNIPIKETLQTSETSTSTLLHTEYRNAIEKHLVKPEPVKKSIYRIRTPSSAAISSAEWRKFYEDKEKVKIEKLELSKKRQDILKKKRIEKEKLKSAKVQTRKIAKSKNSIKKKERARVDCALYHDILISDTEEDSEKNIGCDFCTTWYHLRCTDFVGLKYEEVQNKPFKCNTCMFNRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01156311;
90% Identity
iTF_01156311; iTF_01156371;
80% Identity
-