Pmne021318.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- cheC
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000080.1:30290261-30291070[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-10 1.1e-07 33.4 0.0 3 37 13 48 11 53 0.91
Sequence Information
- Coding Sequence
- ATGGAAGAGAGGAAAAAGAAAGGATCCTGGGAGCCACAGAGCTTACAAACTGCTATTGGTAAGGTTATGTCAAAAGAACTGAGTGTAAGAAAAGCTGCAATGCAATACAATATTCCTAAAAGCACTATACATGATAAAATAAAGGCCCTAAATCGAGGAGAAGAAGTAACAATGAAACTAAAGTTAGGTAGGTTCACTAGCACCTTCTCAGCAGAGTATGAACAAGTCTTGGTGGACCACATTAAAGATTTATCGAATAGATGCATGCCGCTCATGAAAAAGGAGTTTCTAAAATTAGCATACGACTTAGCTGAAGTCATGAAGATTCCTCatcgatttaataaagaaaaaggcAGTGCTGGTAAACATTTTTACTACGACTTCATGAAAAGGCATTCTGACATTTCGTTGAGAGCACCGGAATCGACAAGCATGATGCGCGCCGTAGGATTTAACAAACCACAAGTGGATCTATTCTACGACAACCTTGAAAAGCTGATGAAACAGTACAAATTCACACCCTCAAGAATTTATAACTGTGATGAAACTGGTGTCAGTTGCGTGCACAAACATCAAAAAGTTCTCGCTCCGAAAGCCATCCGTCAAGTAGGTAAGCTCACTTCTGCTGAGAGAGGCAAAAACATCACAGTTTTGTTCTGTATGAGTGCTAACGGTCACTACATACCCCCATTTTTCGTATTTCCTAGACAAAGAATGAATGAAAGGCTTATGGTGAATGCTCCAGCTGAGAGCATCGGTGTGGCCCAGCCAAAAGGGTGGATGAATAGTGActttttttgcaatatctaa
- Protein Sequence
- MEERKKKGSWEPQSLQTAIGKVMSKELSVRKAAMQYNIPKSTIHDKIKALNRGEEVTMKLKLGRFTSTFSAEYEQVLVDHIKDLSNRCMPLMKKEFLKLAYDLAEVMKIPHRFNKEKGSAGKHFYYDFMKRHSDISLRAPESTSMMRAVGFNKPQVDLFYDNLEKLMKQYKFTPSRIYNCDETGVSCVHKHQKVLAPKAIRQVGKLTSAERGKNITVLFCMSANGHYIPPFFVFPRQRMNERLMVNAPAESIGVAQPKGWMNSDFFCNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822855; iTF_00822857; iTF_01359659; iTF_00824655; iTF_00822856; iTF_01564571; iTF_01029181; iTF_01041682;
- 90% Identity
- iTF_00822856;
- 80% Identity
- -