Pmne025407.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000082.1:34422591-34427694[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-10 8.9e-08 33.7 0.0 3 37 105 140 103 145 0.91
Sequence Information
- Coding Sequence
- ATGTTGCTGCGCAATATAAATCCACCAAAATTATGCAACGGCACCAGATTGCAAGTGAAAACATTGCATCGCAATGTAATCGAGGCAACTATATTGACAGGTTGTTTTCGGGGAGTGTCTTTATTTATTCTTAGGAATCACCCAAAACCAACAAATTACCCCTTCGAATTAAAGAGAGTACAGTTTCCTATCAAAGTCTGCTTAGCCATAACCATAAGCAAAGCTCAAGGTGAAACTCTTAAGGTATCGGGAGTAGACTTGAGGGAAAGCTGCTTCTCCCACGAGAAGAAAAAGAAAGGATCCTGGGAGCCACAGAGCTTACAAACTGCTATTGATAAGGTTATGTCAAAAGAACTGAGTGTAAGACAAGCTGCAATGCAATACAATATTCCTAAAAGCACTATACATGATAAAATAAAGGCCCTAAATCGAGGAGAAGAAGTAACAATGAAACTAAAGTTAGGTAGGTTCACTAGCACCTTCTCAGCAGAGTATGAACAAGTCTTGGTGGACCACATTAAGGATTTATCGAATAAATGCATGCCGCTCATGAAAAAGGAGTTTCTAAAATTAGCATACGACTTAGCTGAAGTCATGAAGATTCCTCatcgatttaataaagaaaaaggcAGTGCTGGTAAACATTTTTACTACGACTTCATGAAAAGGCATTCTGACATTTCGTTGAGAGCACCGGAATCGACAAGCATGATGCGCGCCGTAGGATTTAACAAACCACAAGTGGATCTATTCTACGACAACCTTGAAAAGCTAATGAAACAGTACAAATTCACACCCTCAAGAATTTATAACTGTGATGAAACTGGTGTCAGTTGCGTGCACAAACATCAAAAAGTTCTCGCTCCGAAAGCCATCCGTCAAGTAGGTAAGCTCACTTCTGCTGAGAGAGGCAAAAACATCATAGTTTTGTTCTGTATGAGTGCTAACGGTCACTACATACCCCCATTTTTCGTATTTCCTAGACAAATAATGAATGAAAGGCTTATGGTGAATGCTCCAGCTGAGAGCATCGGTGTGGCCCAGCCAAAAGGGTGGATGAATAGTGActtttttttgcaatatctaagaaTATTCGTCAAACACACGCAACCAACTAAAGAGAACCCTGTGCTGCTTCTAATGGATGGCCATTGCAGCCACAAGACATTGGCGGTAATCAATTTTTGCAGAGAAAATCATATTCACTTGATGAGTTCACCACCACACACTACGCACAAGCTCCAGCCTCTGGACAGGACATTTATGAAGCCATTTAAAGATGCATACAGCCAACGATGCGACTTGTGGATAAGAACAAATGCTGGATGTCGGATAACGGATTACGACATTGCTGGTTTGGTCAAAGAAGCATTTATAAAAGTAGCTCGATTGGATATTGCAGTATCTGGATTCAAATGCACTGGAATCCATCCATTTGACAGACATTTATTTTCTGACCTAGATTATTTGGCTGCAGATATGACCAATATACCACTAGAACAAACAGAAACTTCATCGAACGCACTAAACAACGAACAAGCTGTCGTGATATCAAACTTAATCATAGAAGAGCAAATGAAAGAATCTGAACAATCTATTAGTGAGCCTATAACCACAAGTCCCAAACCGTCGACAAGTACTGCTCCCGATCTTGTTCAGATAATCCATAACTTATCACCGTTGCCTGACGCAGCAAAAAAACGAACAGCAGCTCGAAAAAGAAAGAGTGAACGAAGTGAAATTTTAACTTCATCGCCATACAAAAAAGTGgtagaagaaaaagaaaatgaaaagaacATGAAAGATAAAAGGAAGGAAATAAAATCTAAGTTTAAAGTAGCAATGGGAGGTAAAGGAAAGCAAACCAAACGAAATAAAACCAAAGGAAAGAGCGTAGACAAGGGAAAAGAAGCGACAAACGTGAGACCTAAAGGAAAGAAAGGAAGTGAAGTAGAACCATTAACTGAAACATCTAACACAAACATAACAATTTGCGTAGTTTCCTTAGAAGACACTGACGAAGACTGGATCCAGTGCTCATCCTGTCGTGGGTGGGTACATGAAGCATGTGCAGACATTCCAGAGTGTGGTGATGGCTTCATATGTGATCGATGCAGGTTATTTTGA
- Protein Sequence
- MLLRNINPPKLCNGTRLQVKTLHRNVIEATILTGCFRGVSLFILRNHPKPTNYPFELKRVQFPIKVCLAITISKAQGETLKVSGVDLRESCFSHEKKKKGSWEPQSLQTAIDKVMSKELSVRQAAMQYNIPKSTIHDKIKALNRGEEVTMKLKLGRFTSTFSAEYEQVLVDHIKDLSNKCMPLMKKEFLKLAYDLAEVMKIPHRFNKEKGSAGKHFYYDFMKRHSDISLRAPESTSMMRAVGFNKPQVDLFYDNLEKLMKQYKFTPSRIYNCDETGVSCVHKHQKVLAPKAIRQVGKLTSAERGKNIIVLFCMSANGHYIPPFFVFPRQIMNERLMVNAPAESIGVAQPKGWMNSDFFLQYLRIFVKHTQPTKENPVLLLMDGHCSHKTLAVINFCRENHIHLMSSPPHTTHKLQPLDRTFMKPFKDAYSQRCDLWIRTNAGCRITDYDIAGLVKEAFIKVARLDIAVSGFKCTGIHPFDRHLFSDLDYLAADMTNIPLEQTETSSNALNNEQAVVISNLIIEEQMKESEQSISEPITTSPKPSTSTAPDLVQIIHNLSPLPDAAKKRTAARKRKSERSEILTSSPYKKVVEEKENEKNMKDKRKEIKSKFKVAMGGKGKQTKRNKTKGKSVDKGKEATNVRPKGKKGSEVEPLTETSNTNITICVVSLEDTDEDWIQCSSCRGWVHEACADIPECGDGFICDRCRLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01156226; iTF_00428037; iTF_01156236; iTF_01156237; iTF_00822862; iTF_01156238; iTF_00819087; iTF_00822863; iTF_01156239; iTF_00819088; iTF_00822864; iTF_00819089; iTF_00822865; iTF_00822866; iTF_01156242; iTF_00822867; iTF_00822868; iTF_00822869; iTF_00822870; iTF_00000251; iTF_01156252; iTF_01156256; iTF_01157600; iTF_00032842; iTF_01144482; iTF_00822860;
- 90% Identity
- iTF_00032842;
- 80% Identity
- -