Pmne004394.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000002.1:28673867-28675810[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-10 7.4e-08 33.9 0.0 2 42 12 52 11 54 0.94
Sequence Information
- Coding Sequence
- ATGTCTAAAAGAGGGCAATATTACACGTGGAGTGAAACAAGCATGAAACTAGCATTACAGGCATTACGTAATAGGGAAGTTGGCTTAAATGAAGCAAGCAGAATTTACGGTGTACCAAAAGCTACATTAAAGAGACGACTTGATGGCTCAAATCAAACAGCCAAAGAAGAAAAACAAACGCCAGGTTCTGCAGGTGATCTCACACCTGAATTGGAAGAAAAGTTGTACCAACATATTCTAGAAATGGAAGCCTGTTTGTACGGTCTAACACCAAAAGATGTGAGATCACTTGCTTTTAAAATAGCTGAGAAAAACAATATTAAACACAGAtttaataaaacgaaaaaaatggCCGGGAAGAAGTGGTACTATGCATTTTTAAAGCGTCATCGCAGTCTAAGTTTAAGACAACCCAGAGCTACATCTTTAAATAGAGCTACAGCATTTAACAAACCAACTGTCAAAGACTTTTTTGAAAAGTTAGAAAAAGTGATGGATGAGCACGGTATACATGACCCACGATACATTTATAATGTAGATGAGACAGGCCTCTCAACAGTGCAACGAAAACCAAGAAAGATATTGGCCAAAAAAGGAAAGCATCAAGTTGGTGCTATTACAAGTGGTGAGCGTGGATTCACTACTACTGCTGTGTGTTGTGCAAGTGCAGCTGGCCATTTTGTACCACCTCTTGtaatttttaaacgaaaaaacgCTAAAGACGAACTTCGCGACGGTGCTCCACCTGGTTCAATCTTTGCTTTTAACCCCGACAGTGGCTACATTAAtagtgaaatattttttgtttggttGCAACACTTTGTAGAATGTGTAAAGCCGACCACGGAGCAGAAAGTTTTGCTGTTACTTGATGGACACACTAGTCACACAAAAAATTTGGATGCTATCAAATATGCCAAGGAAAACAATGTTGTGTTACTGTCACTTCCTGCTCACACTTCCAATAAACTGCAGCCCCTAGATACTTCGTTTTTTAGACCGTTGAGTTGCTATTATATAGATGAAACAGAGAAGTGGCTGCGTACAAATCCAGGAAGACGTGTTACAGTATATCAAATTTCAATGCTTTTCGGTAAAGCCTACGCCCGTGCTGCATCTATTGCAACCGCTGAAAGTGGATTTCGAAGTACGGGCATATATCCTTTTAATAAGGATATTTTCCAGGATTATGAGTTCGTTACTTTACCTGAAGATAACGACAACTTACCGGCTATTGAGAATGAGAACATGATTGTGGATCCTTTGTTTTCAGAGCTTAATGATGTAGATGACAATGGAATACCAAAAGATGTTACCTCGGATGATTCACCATTTTCGTGCACCAGTGTTGAATCTACTGATGTAAATACGATGCAAACAATACCGTCTGCTTCCAAAACCCCCGTTATACCAAGCCCTGATTTATCGGATAATTGCAACAATATAAATATTCAACCTGAAACACCAATCATAGCAACAAAAGAAGTAAAACAATGGCAGCCACTTCCAAGCACTAGCTCAGAATTTCAAATTTGTAGTGTAACTCCGACTGCAAAGAAAGTCATGCAAGAATTGAGAAAAGGAAGTCGTAAACCACAATCGGCAATAGAGTTAACTGCTTCCCCATATAAAACACAATTGGAAGAGTCAAAAGCTAAAGCATCCAAAACAAAATCTGATGCTGAAAAGAGAAAGAAAGTTGCTGCATTAAACTTGGAGAAAACAGTAAAATCTAATAGACGTCCagaaaaacaaataaagaaaGACGCGAAGAGAAAGAAAGTGCCAGCTGCGGAGTTAGAAAAATGGTTCTGCAAAATTTGTCTCCATTGTGCTATTGAAGACATGATACAATGTTTGTCATGTAAATGTTGGGTCCACGAGGAGTGTGCTTGCGTTAAAAAAGgtatcaaaaaatatatttgtccATCATGTACTGATTAA
- Protein Sequence
- MSKRGQYYTWSETSMKLALQALRNREVGLNEASRIYGVPKATLKRRLDGSNQTAKEEKQTPGSAGDLTPELEEKLYQHILEMEACLYGLTPKDVRSLAFKIAEKNNIKHRFNKTKKMAGKKWYYAFLKRHRSLSLRQPRATSLNRATAFNKPTVKDFFEKLEKVMDEHGIHDPRYIYNVDETGLSTVQRKPRKILAKKGKHQVGAITSGERGFTTTAVCCASAAGHFVPPLVIFKRKNAKDELRDGAPPGSIFAFNPDSGYINSEIFFVWLQHFVECVKPTTEQKVLLLLDGHTSHTKNLDAIKYAKENNVVLLSLPAHTSNKLQPLDTSFFRPLSCYYIDETEKWLRTNPGRRVTVYQISMLFGKAYARAASIATAESGFRSTGIYPFNKDIFQDYEFVTLPEDNDNLPAIENENMIVDPLFSELNDVDDNGIPKDVTSDDSPFSCTSVESTDVNTMQTIPSASKTPVIPSPDLSDNCNNINIQPETPIIATKEVKQWQPLPSTSSEFQICSVTPTAKKVMQELRKGSRKPQSAIELTASPYKTQLEESKAKASKTKSDAEKRKKVAALNLEKTVKSNRRPEKQIKKDAKRKKVPAAELEKWFCKICLHCAIEDMIQCLSCKCWVHEECACVKKGIKKYICPSCTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158695; iTF_01156234; iTF_01156235; iTF_01156222; iTF_01156223; iTF_01157622; iTF_01158680;
- 90% Identity
- iTF_01158695;
- 80% Identity
- iTF_01156234; iTF_01156235;