Pmne023963.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000082.1:5370087-5379506[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00031 0.11 14.2 0.0 1 34 130 163 130 173 0.87 2 2 1.9e-08 6.5e-06 27.7 0.1 2 40 206 244 205 249 0.86
Sequence Information
- Coding Sequence
- ATGATATTACAGTGGCAGCAACCAGAGGACAACATGAAGTACATGGATATGATATGCATCTCTTGCATCTCTCGGTTACGTGATGCACTTGCCTTCAAAAGAGAAGTTTTAGTGAGCGAAGAGGTGCTGCGTGAAAATCAAGATGAAATATTTCTTCATACTACAGTGAAAGTGGAGAAAAATTTAgaagaggaagaagaagaagTGAAGTTTAGTGAAGTGGAATACTTAGAGATCCCAGACAGTTTAAACAAAGAGGAACTATGTGAAGAACCATTATCAGATGAACAATTGCTGAGTTTAGATAACTCTCTGCTAGTAGAACATACAAGAAAAAAGTCAAAAAAGCTCACAAAGGAAGAGGGGAACAAAACGTACAAGCAGTATACTGACGAGGAACTGCAAATGGCCAATGATGCAGTCCAGAACAATGAAATGTCACATACAGAAGCGGCTGAGTTTTTTAAAGTGCCCAGGAAAGCTATCTCTGCTAAGATCCGCAATATTACAGACAAAGAAGAcgATCAATCGCAGTGTCCAGAAGAAAATCGTAAAAGAAAATGGCCGAAGAAACTACCAAAGCAACACCGTAACAAAACATACAAGCAGTATACTGAAAAGGCACTGAGAATGGCCATTGATGCTGTCCAGAATGAAGAGATGTCACGTAGCGAAGCGTCAGAGAAGTTTAAGGTGCCCAAGGAGACTCTTGCATTAAGACTTCAAAATGCTATTGCCAAAAAAGAGGGAGTTATGATGCAAAATTCACCTGTCTTTTCGTCGAAGGAAAGGTTTAAGTACATTCCTTCCTTCAACATTAGATATAATCTTAACATTGGAACTTCATCTGATAATTTTTCTAACACACAATTACATTAA
- Protein Sequence
- MILQWQQPEDNMKYMDMICISCISRLRDALAFKREVLVSEEVLRENQDEIFLHTTVKVEKNLEEEEEEVKFSEVEYLEIPDSLNKEELCEEPLSDEQLLSLDNSLLVEHTRKKSKKLTKEEGNKTYKQYTDEELQMANDAVQNNEMSHTEAAEFFKVPRKAISAKIRNITDKEDDQSQCPEENRKRKWPKKLPKQHRNKTYKQYTEKALRMAIDAVQNEEMSRSEASEKFKVPKETLALRLQNAIAKKEGVMMQNSPVFSSKERFKYIPSFNIRYNLNIGTSSDNFSNTQLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01156253;
- 90% Identity
- -
- 80% Identity
- -