Pmne009106.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- TIGD6
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000024.1:29719219-29724055[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-09 2.8e-06 28.9 0.1 1 43 17 59 17 60 0.93 2 2 6.6e-09 2.2e-06 29.2 0.1 1 43 482 524 482 525 0.93
Sequence Information
- Coding Sequence
- atgccAAATAAATACCAAAGAAAAGCATGCAGCTCACGAGGGAACTGGAGTGAAGAGTCACTTAAGGCGGCCATGGACGCTGTTAAAAAAGGTGAAATGACTATCTACGCAGCTTCAATAACCTATCAAGTACCAAGGAAGACCCTCGAAAGGCGATACAAGAATAATAATGACAAAAAAGGACCAATGGGACCATCCTCTAGATTCGGCGAAAAAAATGAGAAGAAACTCGCTAACCATatgaaaaatatgcaaaaaaatgGTTTCCCATTGACTATTGATGACGTCAGAAAGATTGCGTACCAGTTCGCGGAGCAATTGAATTTGAATCACAGATTTAATAGAGAAACTGAGAAAGCAGGATATGACTGGTTGCAAGGTTTTTTACGAAGAAACCACGATATTACATTAAGAAAGTCAGAAGGAGTATCTTTAGCTAGATCAACTGCTATGAATAAACTGGAGGTTGACGCTTACTTTGAGCTTCTTGAAAGCATATTGACAGTAGACGATGGTGTGTTGAAACTGAGTTGTATCTTCAACATGGACGAGACTGgtcttcagcttaataatcgacCAGGGCATGTTCTAGCTGAAAAGGGTTCTAAGGCTGTATCTACAGTTACTTCGACTGAAAAGGGAGAAACGATTACAGTTATAGCCTGCTGCAATGTTGAAGGTACATTTTTACCACCTGCCTGTATCATGAAAGGCAAAAACAAAAAACCTGAGTTTGAGGATGGGATGCCACCGGGATCGAAACTTTTCATGTCCCCAAAATCAGCGTACATTACCTCAGATTTATTTATTGAATGGTTGAAAACAGATTTTGTTCCGAGGAAACCAGCTGGAAGAGTACTTCTTTTACTAGATGATCATTCAACTCACTGTAATTCTGTGGAAGTGCTGGAATATGCAAATGACAATGACATCAACTTACTTTCAATGCCAAGCCACACGTCTCACCACCTCCAACCACTAGATCGTACGGTGTGTAAATCACTGAAGACTCATTTTTACGAGCAGTGTCGACTTTGGCTAAAACAAAATCCTGGTCGTCGTATAACACGATTATCATTTGGAAGATTGCTTAATAAGGCGTGGGGAAAGGCAGCTTCTGCAGAGAATGCAATTGCGAGTTTTAAAGCTACAGGTGTCCACCCCTTCAATCCATCTGCAATTCCCGACTACGCGTTTACCCAAGAATTGACAAAGCAAATGTCTAAATCTCAAAATGAGTGTACAGCCACTGTTATGGTCGAGGAGCAAGAAGAAAATACTAGTAACATAGCTTCTGCTAATCTGGAACCAGTTCCAAATACTTTCGAAGTGCGACAAGACATATCACCTGCAATCGCTGAGCCAAATAGCTCTGTTGAGCGAATAGTTTTAAACatgccAAATAAATACCAAAGAAAAGTATGCAGCTCACGAGGGAACTGGAGTGAAGAGTCACTTAAGGCGGCCATGGACGCTGTTAAAAAAGGTGAAATGACTATCTACGCAGCTTCAATAACCTATCAAGTACCAAGGAAGACCCTCGAAAGGCGATACAAGAAAAATAATGACAAAAAAGGACCAATGGGACCATCCTCTATATTCGGCGAAAAAAATGAGAAGAAACTCGCTAACCATATTAAAACTATGCAAAAAAATGGTTTCCCATTGACTATTGATGACGCCAGAAAGATTGCGTACCAGTTCGCGGAGCAATTGAATTTGAATCACAGATTTAATAGAGAAACTGAGAAAGCAGGATATGACTGGTTGCAAGGTTTTTTACGAAGAAACCACGATATTACATTAAGAAAGTCAGAAGGAGTATCTTTAGCTAGATCAACTGCTATGAATAAACTGGAGGTTGACGCTTACTTTAAGCTTCTTGAAAGCATATTGACAGTAGACGATGGTGTGTTGAAACCGAGTTGTATCTTCAACATGGACGAGACTGgtcttcagcttaataatcgacCAGGGCATGTTCTAGCTGAAAAGGGTTCTAAGGCTGTATCTACAGTTACTTTGACTGAAAAGGGAGAAACGATTACAGTTATAGCCTGCTGCAATGCTGAAGGTACATTTTTACCACCTGCCTGTATCATGAAAGGCAAAAACAAAAAACCTGAGTTTGAGGATGGGATGCCACCGGGATCGAAACTTTTCATGTCCCCAAAATCAGCGTACATTACCTCAGATTTATTTAATGAATGGTTGAAAACACATTTTGTTCCGAGGAAACCAGCTGGAAGAGTACTTCTTATACTAGATGGTCATTCAACTCACTGTAATTCTGTGGAAATGCTGGAATATGCAAATGACAATGACATCAACTTACTTTCAATGCCAAGCCACACGTCTCACTACCTCCAACCACTAGATCGTACGGTGTTTAAATCACTGAAGACTCATTTTTACGAGCAGTGTCGACTTTGGCTAAAACAAAATCCTGGTCGTCGTATAACACGATTATCATTTGGAAGATTGCTTAATAAGGCGTGGGGAAAGGCAGCTTCTGCAGAGAATGCAATTGCGGGTTTTAAAGCTACAGGTGTCCACCCCTTCAATCCATCTGCAATTCCCGACTACGCGTTTACCCAAGAATTGACAAAGCAAATGTCTAAATCTCAAAATGAGTGTACAGCCACTGTTATGGTCGAGGAGCAAGAAGAAAATACTAGTAACATAGCTTCTGCTAATCTGGAACCAGTTCCAAATACTTTCGAAGTGCGACAAGACATATCACCTGCAATCGCTGAGCCAAATAGCTCTGTTGAGCGAATAGTTTTAAACGCAAGTCCTGAGATGATTACAAGAAGGCCTAAAAAATTATTTGCTACTGCTTCAGcagcagtaattaaaaaaatgtcagaACAATTCCCTCCAAGAAGCGATTTGCCAGATCTGACTCCAACACGTATTTTAAAGCAAATATCGCCAGTTccacaaaaaattattgaagtaCGCAAACGTGCTAAACAGGTAGGCATGCTTTTAACCTCAGAGAATCACATCAAAACAAGAAAATTTAAGGAAGCGCTTAAAAAAAATAGGGAACAAAAAAATTTCGAAAAAGACgttaaaaaggaaagaaaaattgAGATAAAACCAATAAAACGAGCACCAAGAAAGAGAAAATCATTAAGAAAGTTATCTGAAAGTAGTGATGAGGATGAAGAACTAATATTATGTAATTCATCTGATGAAGAAGATGGAAACAGAGAATTGGATAACTGTGTAGGTTGTGGAGAAAATTATTACGAAACGCAACTCATCGAAGATTGGATTCAATGCGTTATATGCCAACTGTGGGTACATGAAAATTGCACTGAATTCGATGATAAGTGTTCATCATGTGGGCAGAAAAAGAAGAATGAGCTAAGGCTCAAAAACTTAAAGGGAAAAAGTGATTAA
- Protein Sequence
- MPNKYQRKACSSRGNWSEESLKAAMDAVKKGEMTIYAASITYQVPRKTLERRYKNNNDKKGPMGPSSRFGEKNEKKLANHMKNMQKNGFPLTIDDVRKIAYQFAEQLNLNHRFNRETEKAGYDWLQGFLRRNHDITLRKSEGVSLARSTAMNKLEVDAYFELLESILTVDDGVLKLSCIFNMDETGLQLNNRPGHVLAEKGSKAVSTVTSTEKGETITVIACCNVEGTFLPPACIMKGKNKKPEFEDGMPPGSKLFMSPKSAYITSDLFIEWLKTDFVPRKPAGRVLLLLDDHSTHCNSVEVLEYANDNDINLLSMPSHTSHHLQPLDRTVCKSLKTHFYEQCRLWLKQNPGRRITRLSFGRLLNKAWGKAASAENAIASFKATGVHPFNPSAIPDYAFTQELTKQMSKSQNECTATVMVEEQEENTSNIASANLEPVPNTFEVRQDISPAIAEPNSSVERIVLNMPNKYQRKVCSSRGNWSEESLKAAMDAVKKGEMTIYAASITYQVPRKTLERRYKKNNDKKGPMGPSSIFGEKNEKKLANHIKTMQKNGFPLTIDDARKIAYQFAEQLNLNHRFNRETEKAGYDWLQGFLRRNHDITLRKSEGVSLARSTAMNKLEVDAYFKLLESILTVDDGVLKPSCIFNMDETGLQLNNRPGHVLAEKGSKAVSTVTLTEKGETITVIACCNAEGTFLPPACIMKGKNKKPEFEDGMPPGSKLFMSPKSAYITSDLFNEWLKTHFVPRKPAGRVLLILDGHSTHCNSVEMLEYANDNDINLLSMPSHTSHYLQPLDRTVFKSLKTHFYEQCRLWLKQNPGRRITRLSFGRLLNKAWGKAASAENAIAGFKATGVHPFNPSAIPDYAFTQELTKQMSKSQNECTATVMVEEQEENTSNIASANLEPVPNTFEVRQDISPAIAEPNSSVERIVLNASPEMITRRPKKLFATASAAVIKKMSEQFPPRSDLPDLTPTRILKQISPVPQKIIEVRKRAKQVGMLLTSENHIKTRKFKEALKKNREQKNFEKDVKKERKIEIKPIKRAPRKRKSLRKLSESSDEDEELILCNSSDEEDGNRELDNCVGCGENYYETQLIEDWIQCVICQLWVHENCTEFDDKCSSCGQKKKNELRLKNLKGKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -