Basic Information

Insect: Parnassius glacialis
Gene Symbol: -
Assembly: GCA_033319125.1
Location: JAVANC010000015.1:13662227-13683706[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.025 5.6 9.5 3.4 1 23 441 463 441 463 0.96

2 8 0.0059 1.3 11.4 2.2 2 23 469 490 468 490 0.96

3 8 0.058 13 8.3 3.1 5 23 579 597 577 597 0.94

4 8 0.055 13 8.3 0.7 2 23 614 635 613 635 0.96

5 8 1.4e-06 0.00032 22.8 3.4 1 23 641 663 641 663 0.98

6 8 0.00051 0.12 14.7 0.4 1 21 668 688 668 689 0.95

7 8 1.5e-05 0.0033 19.6 3.6 2 23 697 719 697 719 0.97

8 8 0.00036 0.082 15.2 0.3 3 23 758 779 757 779 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.025	5.6	9.5	3.4	1	23	441	463	441	463	0.96
2	8	0.0059	1.3	11.4	2.2	2	23	469	490	468	490	0.96
3	8	0.058	13	8.3	3.1	5	23	579	597	577	597	0.94
4	8	0.055	13	8.3	0.7	2	23	614	635	613	635	0.96
5	8	1.4e-06	0.00032	22.8	3.4	1	23	641	663	641	663	0.98
6	8	0.00051	0.12	14.7	0.4	1	21	668	688	668	689	0.95
7	8	1.5e-05	0.0033	19.6	3.6	2	23	697	719	697	719	0.97
8	8	0.00036	0.082	15.2	0.3	3	23	758	779	757	779	0.95

Sequence Information

Coding Sequence: ATGTTACTACCTGTGAAATGCATTACTGGAGAGATTGTTCATTCGGAAACAGTTCTTAATATTCCTGAGAAAGATTTAGAAGTTTTCATGAACGGATTGGAAGATGATGAAAGTAATTTCGAAGAAGACGATGATGACATTATAATCTTAGATGATGGTGGGCCTTTGCCAGTAGTTCCAAAGAAAAATGAAGAATGCGATATATATACACTGCACGCACAATTAGATGCTGAAATACAAAAAGATGTTGAAATGGAGGCAGCCATATCTAAAGTTTTTAAAGCGTCCAATTGCTATCAGAAGTTCTTGGAAAAGGAAACAATAGAACCTTTGGAGGAAAatctgtatgatgatgatgaccttatTCTTCTAACCAACTCTGATGAAGTTACAATCATATCAGATTCAGAAGACGACAATAAGAATGAGGACTCTAAAGAAAGAGAAGAAGCTAATACAAATCGTAATACGAAAGTGAAGGAAGAACCAAAAGAtgatacaaatattttatgtggGAAAGATGGTACAATAGAAGTACATCCAGAACATAACACAAAAGTTAAGACTTTGTTTGCAAAAGATAATTCTGTAATAGAAAATTATGATCTGATGAAAGAATATCATCCCGGTCAATCAAATAATGTCAAAAGAGAAAAAGAAGATGATACGATATATCTACAGAGCGAGGATCGTAATATGGACGTAAGAAATAAAGTGAAAGACAAACTAAAACATGATTATATTAGGGTGTCGTGCCCAGGCAATGGCACATATGCTCCACATCAAGACGAAGATAGCAGTTTGAGGCATAGTATAGAAATAAAAGAAGAACCAGTAGATAATTCACGTCTACAAGATGcagaattttattttcattatagtcCTGAAGTGAGATTGGAATCAGAAGACGAAATAATTATGTCGCATTCAAGTGATGTTTCAAATGCGTCATCTCCACAAGATGTAGAATCTAATTTGAATCATACAACTGAAGTGAAAGAAGAACCAATAGATGATATAGTTATGTTTTATCCAGGTGATGAAAATGCGTTATATCCACAAGAGGTACATTATGACAAGGTTAATAAAATCGGGGTGAAAGATCCAGTACGTGATGCCGCATTGTCGTATAGCAAAACTAAGCGGCCAGCAAAGAATAAACGTACAGAAAACTTAAAAAGTAATATTGTTACAAGAGAAGAGCCCGTATCAGATAAGGGGGAATCAGGAGAAATCCTCTATGCGTGTAAAAAGTGTCAGTTTCGAGGTTGCTACAATGAATATATTGAACACATAACTTCAAGTTGTGTTGCTATGTCTTTTTATTGTTCGACTTGTACTACAACCTTTCCGACTTTAAAACTTTACGCGCACCATTTAACTCagcataattacatttttttgacATGTCCCATATGCAAACAGCAGTTTAAGGAGGACTCGAGGTTGTGCACACATATAAAGTTACACTTGAGAAACCTTTACATGAAGACACAAGATGTTCAAAACATGGATCTACCACCCTCACAAAAGAATGATATCCTTCAGTGTATTGAATGCAGGAAAATTATTAAATCTGAACAAATCTTCATTCACTGGGATTTGCatttgaaaatgaaaaatgacaaGGAAACGGCAGATGATGACGAGGCAGAAATGAACTCTAAAGTTACAAAAAAAGTCATAGaTATGCTCCTAATAAAGAAACAAAGGAATATGGTGAGGTTATGCATTGTCTGTAACAAAACCTTTTCTAGAAGAAACGAATGCAAGCGGCATTTGATCATGCACCTTCTCCATCAAGCATTAAGGTCTAAAGTAAAAACTAATAACCAGTTGCGATGCCAGCTCTGCGGTACTGACCAGAACAGTCTAGCTCAATATAAGGAGCACATGAGGAGGCATGCTTCAATGACCTTACATAAATGCCAAATTTGCGCGAAAACCTTCAGTGACTCCAGCAACTATTCCAAACACATGAAAGTACACAATCTCTATTCATTTAACTGTGACAAGTGCGGTGGGAAATTTCGCTCGAAGATGTCCCTAATCAAACATTTGCAATTGAACGAATCTAGCCCGCCCGCGACTTGCCCGCAGTGTGACATGTCATTTTGTACCGAATCGAAGTTGAAAAGGCACTATAGGGTAAAACACATGCGCGGATGCTCGTCATTTCTTTGTATTATATGCAAGAAGAGGTTCGGGAGCGTGAAAGACAAATGGGACCACATGTGGCTGGAACACCAAGAGAGGGCGATTGAGGCGGACTGTCCTTCATGCAACATGGGGTTCAGAAAATTCAGTGACCTCAAGTGGCACATGAAGGCAGTACATTCGTCACACTTAAAACCTAATAGTCTTTCAGATAAATTAGCCAAGCTATAA
Protein Sequence: MLLPVKCITGEIVHSETVLNIPEKDLEVFMNGLEDDESNFEEDDDDIIILDDGGPLPVVPKKNEECDIYTLHAQLDAEIQKDVEMEAAISKVFKASNCYQKFLEKETIEPLEENLYDDDDLILLTNSDEVTIISDSEDDNKNEDSKEREEANTNRNTKVKEEPKDDTNILCGKDGTIEVHPEHNTKVKTLFAKDNSVIENYDLMKEYHPGQSNNVKREKEDDTIYLQSEDRNMDVRNKVKDKLKHDYIRVSCPGNGTYAPHQDEDSSLRHSIEIKEEPVDNSRLQDAEFYFHYSPEVRLESEDEIIMSHSSDVSNASSPQDVESNLNHTTEVKEEPIDDIVMFYPGDENALYPQEVHYDKVNKIGVKDPVRDAALSYSKTKRPAKNKRTENLKSNIVTREEPVSDKGESGEILYACKKCQFRGCYNEYIEHITSSCVAMSFYCSTCTTTFPTLKLYAHHLTQHNYIFLTCPICKQQFKEDSRLCTHIKLHLRNLYMKTQDVQNMDLPPSQKNDILQCIECRKIIKSEQIFIHWDLHLKMKNDKETADDDEAEMNSKVTKKVIDMLLIKKQRNMVRLCIVCNKTFSRRNECKRHLIMHLLHQALRSKVKTNNQLRCQLCGTDQNSLAQYKEHMRRHASMTLHKCQICAKTFSDSSNYSKHMKVHNLYSFNCDKCGGKFRSKMSLIKHLQLNESSPPATCPQCDMSFCTESKLKRHYRVKHMRGCSSFLCIICKKRFGSVKDKWDHMWLEHQERAIEADCPSCNMGFRKFSDLKWHMKAVHSSHLKPNSLSDKLAKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01155855;
90% Identity: -
80% Identity: -