Pgla059109.1
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- -
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000028.1:10383440-10426508[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.057 13 8.3 3.0 1 23 318 340 318 340 0.96 2 11 0.0009 0.21 14.0 2.7 2 23 348 369 347 369 0.95 3 11 0.17 38 6.8 0.5 1 23 373 395 373 395 0.97 4 11 0.0033 0.75 12.2 1.2 1 23 400 423 400 423 0.98 5 11 0.13 30 7.2 0.2 1 23 427 450 427 450 0.93 6 11 1.9 4.3e+02 3.5 0.2 2 21 466 485 466 490 0.91 7 11 7.4e-05 0.017 17.4 1.0 3 23 500 521 500 521 0.98 8 11 0.38 86 5.7 0.8 2 23 541 563 540 563 0.96 9 11 3.1e-05 0.007 18.6 0.5 1 23 574 596 574 596 0.98 10 11 1.7e-05 0.0039 19.4 1.0 1 23 602 624 602 624 0.99 11 11 4.6 1e+03 2.3 4.4 1 22 630 651 630 654 0.89
Sequence Information
- Coding Sequence
- ATGGAAGACATAAAAGTGTGTAGAATATGCCTCGTTATGGATGTTAAAATGTTCGACCTGCAATCTTATCCTCTAGGAACTTACTATGAACTAATTATAGGAGTAAACCCACTAAAGTTGGCAGATCTGCCACAATTTGCCTGTTACGAGTGTGCCGCATTAGTCAAGAAGTTCTTTTTCTTCCGTGAGAAGTGTCTGAGGGGACAAGCTGCTCTATGTGGTATACTGCATTCATCGGGACAGATAACATCAGAAGATAtaaaacagatagacagacaatatttatatttaaaatcaaacctCTCTGTAGTAAATATAGAAGAGGGTCAAGACGTTTATATTCCTTATCAAAATGAAACTAAAGATAATATTATCAAAGAGGAGTTATTTGATACAGAAGAAAGTATTCAAGATTTTGATGATGGACTAGAAAAACCCTTTGAACTAGAGGAGAGTATTCAAGAGTGTGATGTGGAAGCTGGAAATATAAAAGAAGAAGATTGTTTGGATGAAATTCCTGCAACATTATCAAGtgatgataatgaaccactatctCTTCATAAAACTAATAAAGAGAAGCAACTTAAAAAGACATTCATGAAAAAGAAGCGAAGGAAATCAGTAAAGAAGGAGGAACATGAAGGGCCTGATTTAGAAAATAGGcctgaagaaaatttaattttcactGAGagTGCAGATGACAGTCAAATGTTGCCTCCAGATATTATTGAAATTGTTAAAAGAAAACCCAAAAGAGGACGTCCGCGTAAAATTGTAGAGGAATCAATGGAGAAAAAAGTACAGAAGCCAAGAAGAACGAGGACCACGGGAGGACTACCTGATGATGAGACAGACCTGGAAGATTATGTCACAATCATAAAATTAACGGTGGAGGAACAGATTGAAGAGATAACGAAGCGCAAGACTTCGTCGAACTATCTGAACGCGTCCTTCCAGTGCAATTTGTGCTATAAAGGCTTCATAGACACGCACGCGTGGAAACATCACGTGGGGAAACACGATCCAAGCGCGGGCGATCTGGAGTGCTCGATCTGCAAGTTCCGCTTCAAAACGAAGCGGACGCTGCAGAAGCACGTCACCAACCACGAGAAGAAGTACGCCTGCAAAGCTTGCCCTTATGTCTCGAAGACAACGACACAAGCAAAACAGCACCAGAGGTGGCATAAGGGCGTCACTTACAAATGCCAGTACTGCGATGAAATATCAACCAAGTGGACGTCGTACCTGAGCCACGTGCGCATGAAACACCCGTCGCAGCACATCTGCGGCGCGTGCGGCTACTCCTTCGTGAGTCGCCTTGGCCTCGCCATGCACCGCACCATGATGCACAAGGACCTCgaGAAGTTAGAAGCAGAAGAAAGTGAAGAAGGTCCGTACTGCGAGCAGTGTGACGTGAAATTCTTATCAGAAGAAGCTTGGAAAAGACACATGGTGACTTCAGTGAAGCATACACAGAGCACTGATTTTAATACGGGATGCCGGGTCTGCGGTGAGACATTCAGTAACGCAGAAGAGTTACGTCTGCACCATAGAACGGAACACGCGCGCAAAAGGCCCAAGAACTATGGCAAGAAGCCATCCAATCTCGCCTGGCCCACAGAATGCGAACATTGTTCTGAGAAGATAGCGAATGCACGAGACTATTGGACTCACTTTCGACGCGTACATCCTGATAAAAATTACCCAATTCAGAAGAATTATATCTGTGATATTTGCGGCAAGAGTTTTCGGGGCAATGCATTTTTAGTGTATCACAAACGAACACACTCCGAGGAGCGTGCATACAAATGCGCCCTGTGTCCGAAAGCGTTCTTCAACCGCACCAACCTGCAgatgcacgaacgcacgcactccGATGTGCGGCCGCACCCCTGCCCGGTCTGCTGCAAGGCCTTCAAGTGCAAGGGCGCGCTCGAGCGGCACTCGCGAGTCAAGTCACACTGGAGTGAAACCGTACGAGTGCGAAGTATGCGGCAAGGCGTTCGCGCAGTCCAACAGCCGCAAGTTGCACGTGCGCACCGTGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGATTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTATTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCGCGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGAGCACCAGCTCTACTGACCGCTCTACTGCACGCTACTGGACTCCACTGCGCACCACAAGCAGCCCTCGCCGTACATCAGCCGAAGAGAAAACAGTTTTAG
- Protein Sequence
- MEDIKVCRICLVMDVKMFDLQSYPLGTYYELIIGVNPLKLADLPQFACYECAALVKKFFFFREKCLRGQAALCGILHSSGQITSEDIKQIDRQYLYLKSNLSVVNIEEGQDVYIPYQNETKDNIIKEELFDTEESIQDFDDGLEKPFELEESIQECDVEAGNIKEEDCLDEIPATLSSDDNEPLSLHKTNKEKQLKKTFMKKKRRKSVKKEEHEGPDLENRPEENLIFTESADDSQMLPPDIIEIVKRKPKRGRPRKIVEESMEKKVQKPRRTRTTGGLPDDETDLEDYVTIIKLTVEEQIEEITKRKTSSNYLNASFQCNLCYKGFIDTHAWKHHVGKHDPSAGDLECSICKFRFKTKRTLQKHVTNHEKKYACKACPYVSKTTTQAKQHQRWHKGVTYKCQYCDEISTKWTSYLSHVRMKHPSQHICGACGYSFVSRLGLAMHRTMMHKDLEKLEAEESEEGPYCEQCDVKFLSEEAWKRHMVTSVKHTQSTDFNTGCRVCGETFSNAEELRLHHRTEHARKRPKNYGKKPSNLAWPTECEHCSEKIANARDYWTHFRRVHPDKNYPIQKNYICDICGKSFRGNAFLVYHKRTHSEERAYKCALCPKAFFNRTNLQMHERTHSDVRPHPCPVCCKAFKCKGALERHSRVKSHWSETVRVRSMRQGVRAVQQPQVARAHRAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGFHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLRATGLHCAPQAALAVHQPQPPRAPQPPRAPALLTALLHATGLHCAPQAALAVHQPKRKQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157283;
- 90% Identity
- -
- 80% Identity
- -