Pgla060774.1
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- -
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000029.1:2482683-2500999[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.23 54 6.4 0.0 2 23 201 222 200 222 0.96 2 12 0.0002 0.046 16.0 3.0 1 23 228 251 228 251 0.95 3 12 1.6 3.6e+02 3.8 0.5 1 22 266 287 266 288 0.70 4 12 0.00037 0.084 15.2 3.4 1 23 556 578 556 578 0.98 5 12 0.00032 0.074 15.4 3.0 3 23 585 606 583 606 0.96 6 12 2.2e-05 0.0051 19.0 1.0 2 23 615 636 614 636 0.97 7 12 0.035 8 9.0 1.8 2 23 640 661 639 661 0.96 8 12 0.23 52 6.4 1.4 3 23 676 697 674 697 0.95 9 12 0.03 6.9 9.2 4.2 1 23 703 725 703 725 0.96 10 12 0.014 3.3 10.2 4.3 2 23 732 753 732 753 0.98 11 12 0.004 0.92 11.9 5.1 1 23 759 782 759 782 0.96 12 12 0.0071 1.6 11.1 2.8 1 23 786 809 786 809 0.95
Sequence Information
- Coding Sequence
- ATGGAGCCAAAACTAGCAAACGCTAATGATATGAAAACGTATTTAAACTGTCGTAAGAAATCTTTACAGCATTTCAAAGATAATAAAAGTGGTGGTTTGACTACTAAGGACGCTGTGCAGTTTTTATTGCAAGGAACACTGAAGCGGAAAGTATGCCGATTTTGTTTGTCAATAACAACCTCCTTATCGGAATTGGATGAGATCCTTGAAGTGGCCAGTTTAGGAGCATTGTATCAAGTCACTATTAGGGATATGATCGCTAGCTTCTATCCTTTTCAGgTGTCAGATGATCCCAACTTTCCCAGCAAAATATGCACCAAGTGCTTAGATAAAACAATTAGCTCATATTTATTCACACAGCAATGTGAACGTGCTGAACGTGCATTACGTAACTACTTCAATGATATTAatgaaaaatttgagaagttagATCCTCTTGAACGGGTCAAAAAACGAGGAAGACGAAAATTGAATCCAAACTTCAATATGCTGTACGTAgattataaaaaagttatgagttatgCAGATCCAATaattaatatagtaaatattGGTGCATCGCTTGAAGAAAACGAAGATGAAATGGAAATAAGTGAATTAGAATGTCCAAGATGTTGGGTGGTATTACCCAACATAGAATCATTAATCAATCATGAGAAAATCCATCCAAAATCTATGTGGTATAATTGTAGACTTTGTGGCAAATCATTTGTCAAATATTCTCAATACAAAAATCACAAAAAGCAGATTCATATACTTGGAAAAAAGTCTGATATCaatataacaaaaaaagaatttaaatgtAATGAATGTGGGCTGATTTCAGAAGATGTTGGAAAACACTTGCAACATatagaaaaacataaatttaaacaGGTTATAGAACATTTAATTGAAAGGAAAATGAATGATTTATGTACAGTCTGCATGGAGAAGGGAGAAAAAATGATGGAATTGAAtgaaacattacattttcatgcAGGATACCCTGAATTAACTGGAGAAAAGTCTTTAGCTACTGTATTGACTGCAACTATTCCTGAGATGAACACTGTTCATGACAACACTGGGACAAAAATTTGCGAAACATGTCTAAATCATGCAATAGCCTCTTACATTTTTGTTAATAAGATTAAATACACTAGAGATAGATTACAGACATGTATTAGTCTAATGTTAGAGAATTTAAAAGAAGTAGGAAATTCAGATAATTACCGGCACATAAGGGTAGAAATATCAGCAGATACTATTTTACCTTTAATGGTGAAGGAAGAACCGGTAGAAGATGTTTTTCAAAGTGAAGATTGTGATATAGATGAATCAAAATTAAAAGTAGAGGTCCTAGAGGATGAATTTAGAATAGAATCTGAAAGCTCGGACGATGGCAGTTCAAAATTTGAAGATTTTAGTATAGAAGTGGAAAACAAGAAAAGAAGTGACAATCTTAAAAATACTTGCTATCCATTTAGTGCTAACACAAATTTATTTTTTGACAACCCAGCGAGAGATGcaaccaaaaaatattttaataaaaaactagTGAATGGTTATCACATAAAGGGAACAAACAGCAATAATTTGAAAAACACCCCTGTTGATAATATCTGTAGTGAATTCTTAACATTTAAAATGAAACCAAAGCCATTAAAGAGGCGTAAACCTAAATTTACATGTCCTCTCTGTGGTAAACATTTCATTTCggattatttctttaaaaagcaTGTTTTGAAGCACATTAACATGAAAATTAATTGCCATTTATGTTCAAAGCAATTTAAATCAAAGTTCTATCTATTTGAACATATTAAGATGGTTCACATTGCAAACGATAAAACCTATAGTGTGTGCAAGATATGTGGTAGAAGTTTTGCGGACATAAAAAAGTTactaaaacacaaaaaaacacATCAGACCAAAGAATGTCTGCTGTGCGATAAATTGTTCTCGTCCCAGAAACGTTTTGACAGTCACTTACAAAGGCATGCAGTCAAATTCAACATGGTCAAGAAACTTAAAATCCAGATATGCAGTTTTTGTGAAAAAGAGTGTTCAAATGGAAACGAACTATCTCTGCACGTGAATAAGTCGCATTTGCAAATAAAACCTTACAGTTGTGATATGTGCGAGAAACAATTCTACACAGAATACAATTTGAGTTGTCATAAAAAAGTGCACAGTTCATATTCAAAGGAGACTTGTGAATTCTGTAAAAAAGTGTTTAAGTGTAGGAAAGACTTGGTTATTCATCTTAGAAAGCATATAGGCACGAAACCCCATCACTGTCAGGTTTGTCAACAATCTTTCTATTCAGATAAAGGCTTAAATAGTCATATGAGACGGACTCACGGAGGTAGATTTTGTTGTCGACTTTGTAAATtgatatttaataacaaaatggACCTTAAGAGCCATGTAAATGTAACACACAATGTTATTTAG
- Protein Sequence
- MEPKLANANDMKTYLNCRKKSLQHFKDNKSGGLTTKDAVQFLLQGTLKRKVCRFCLSITTSLSELDEILEVASLGALYQVTIRDMIASFYPFQVSDDPNFPSKICTKCLDKTISSYLFTQQCERAERALRNYFNDINEKFEKLDPLERVKKRGRRKLNPNFNMLYVDYKKVMSYADPIINIVNIGASLEENEDEMEISELECPRCWVVLPNIESLINHEKIHPKSMWYNCRLCGKSFVKYSQYKNHKKQIHILGKKSDINITKKEFKCNECGLISEDVGKHLQHIEKHKFKQVIEHLIERKMNDLCTVCMEKGEKMMELNETLHFHAGYPELTGEKSLATVLTATIPEMNTVHDNTGTKICETCLNHAIASYIFVNKIKYTRDRLQTCISLMLENLKEVGNSDNYRHIRVEISADTILPLMVKEEPVEDVFQSEDCDIDESKLKVEVLEDEFRIESESSDDGSSKFEDFSIEVENKKRSDNLKNTCYPFSANTNLFFDNPARDATKKYFNKKLVNGYHIKGTNSNNLKNTPVDNICSEFLTFKMKPKPLKRRKPKFTCPLCGKHFISDYFFKKHVLKHINMKINCHLCSKQFKSKFYLFEHIKMVHIANDKTYSVCKICGRSFADIKKLLKHKKTHQTKECLLCDKLFSSQKRFDSHLQRHAVKFNMVKKLKIQICSFCEKECSNGNELSLHVNKSHLQIKPYSCDMCEKQFYTEYNLSCHKKVHSSYSKETCEFCKKVFKCRKDLVIHLRKHIGTKPHHCQVCQQSFYSDKGLNSHMRRTHGGRFCCRLCKLIFNNKMDLKSHVNVTHNVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158211;
- 90% Identity
- iTF_01157139;
- 80% Identity
- -