Pgla010089.1
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- -
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000004.1:65916648-65925429[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0083 1.9 10.9 1.3 1 23 261 284 261 284 0.96 2 10 1.5 3.5e+02 3.8 0.2 2 23 311 333 310 333 0.92 3 10 3e-05 0.0069 18.6 0.3 1 23 356 378 356 378 0.98 4 10 3.2e-05 0.0074 18.5 0.3 1 23 382 405 382 405 0.95 5 10 0.00019 0.044 16.1 0.5 1 23 410 433 410 433 0.96 6 10 0.086 20 7.7 1.3 1 21 439 459 439 462 0.85 7 10 7.7e-08 1.7e-05 26.8 2.7 1 23 469 492 469 492 0.98 8 10 0.14 31 7.1 8.2 1 23 498 520 498 520 0.96 9 10 3.2e-07 7.4e-05 24.8 1.6 1 23 526 548 526 548 0.99 10 10 3.8e-05 0.0087 18.3 1.8 1 23 554 576 554 577 0.95
Sequence Information
- Coding Sequence
- ATGGAATCAAAAGACCCTAATACTAATTATGGAACATGCCGGTTTTGTTTAGCGAAAGGCCAGCATCaagatatttttaaagaatactaCTGGAACGGTGCCAAGGAAGTTTATTTGGATATAATTATGGAGTGCttcaatatttttctaTCCAATAACACAGAGATCAGCAAACTTGTCTGCCTGCTATGTGTGAATCGTTTGAGGGATGCCAACAGCTTCCGCTTAATGGTGGTGAACTCGGAGCAGCAATTGCTCAAAACTATCACTGACAAGGAGACTGTCTTTGTTAatgTACCCTCAAGTGACCATGTATTGGATACTGCTGGGGACGTCAAGGAGGAGACTCAAATTGAGGTGAAAGAGGAAGTGTTGGATGAAGAGATACCTCAAGCTATGGACTCTGATTCTGATTTCACACTGGACGACAACGAAATTTATGATACCACAACGAAAGATAATCATCGCATATCCGGTGAAGAAATGGTGGATGGTGAAGCGGCATTGCTCGCGCGGTTTCCAATGAACACATTAAAGTTGCCGACAAGGGAGTCCCTCCAGCACACATGTCCGAACTTCTTCCGCCATCTTGAACTACTTAAGGGCAAAATAATCTTACCAAGTATGATAGCAAAGCTTCTAGAAGATTCAAACAAACAacaaatatctttaaaaaaaagaaagctgTACATAACAGAGAAGGTGGCGCACATTTTAAACGCTTCGACGCTTCTAGAAAATTCCAATGCAACTCCGTTCAAAAGCCGGAACCGATCGGGATTCCCTTGCGTTTACTGTCGCTGTATTTTTGATAATTTGGAGAAATTGCAGGAACACCAGGCTAAATCACACAAGAAGTCAGAGATTAGAAAGATTTTGGGCACATATGGAGCGGAATGCTTTGTCGTTTATGTGGATATTACGAATTTGATGTGTACAGTATGCGATAGCAGAATGCAGAATTTAAACGAACTAAAAGATCATTTGATAAAAGTACACAAAAAGAAAATGCATACGGAGTTCACAGATAGAGTCATTCCGTTCAAACTGTCAGAGGACAACATCTACGAGTGTCAGATATGCGGCTTCAAATTCGAGACATTCGGCTCAATTGAACGCCACATGAACGTACACTACAGGAACTATGTCTGCGAGGAATGTGGTACAGGATTTGTGACCAAATACCGTTTGAAAGTTCACACAAAAGCGATGCACATCGGTGGCAGTTTCCCTTGTGAGATCTGTAACAAAGTGTACAGCACTCAGCAAAAACAGAAGAACCACGTCGACACTGTCCACAAGATGGTGAAGAGGTTCAAATGTACACAGTGCCCGGAGAGGTTCTCCGAGTACTTCCGAAGGCAAAAGCACTTAGTGGAAGTACACGGGGTGGCCCCGTTGCAGTACAAGTGTAATGTATGTGACAAATCTTTCGACAGGAGGTACACTCTATCAAGACATATGAAGCGGGATCACTTGGAGGAGAGAGACTTTCACTGCCACTTGTGCTCATATAAATGTTTTACAAACAACGAACTGAGGGTCCATATGGTGAAGCATAATGGTGAGAGAATCTACGAGTGCTCTGTTTGCAAGAAGTCCTATGCCAGGAAGAAGACCCTGAAGGAACATATGCGGATCCACAATAATGACAGGAGGTTCGCTTGTGCGGTGTGCGGTCAGGCTTTTGTACAGAAGTGCAGCTTAAAAGGCCATATCAAAACGCACCACATGGAATATAATATACATTGA
- Protein Sequence
- MESKDPNTNYGTCRFCLAKGQHQDIFKEYYWNGAKEVYLDIIMECFNIFLSNNTEISKLVCLLCVNRLRDANSFRLMVVNSEQQLLKTITDKETVFVNVPSSDHVLDTAGDVKEETQIEVKEEVLDEEIPQAMDSDSDFTLDDNEIYDTTTKDNHRISGEEMVDGEAALLARFPMNTLKLPTRESLQHTCPNFFRHLELLKGKIILPSMIAKLLEDSNKQQISLKKRKLYITEKVAHILNASTLLENSNATPFKSRNRSGFPCVYCRCIFDNLEKLQEHQAKSHKKSEIRKILGTYGAECFVVYVDITNLMCTVCDSRMQNLNELKDHLIKVHKKKMHTEFTDRVIPFKLSEDNIYECQICGFKFETFGSIERHMNVHYRNYVCEECGTGFVTKYRLKVHTKAMHIGGSFPCEICNKVYSTQQKQKNHVDTVHKMVKRFKCTQCPERFSEYFRRQKHLVEVHGVAPLQYKCNVCDKSFDRRYTLSRHMKRDHLEERDFHCHLCSYKCFTNNELRVHMVKHNGERIYECSVCKKSYARKKTLKEHMRIHNNDRRFACAVCGQAFVQKCSLKGHIKTHHMEYNIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157067; iTF_01159918; iTF_01154458;
- 90% Identity
- iTF_01157067; iTF_01159918; iTF_01154458;
- 80% Identity
- -