Pgla010007.1
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- -
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000004.1:64975481-64980986[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.87 2e+02 4.6 0.5 1 23 71 94 71 94 0.88 2 21 0.7 1.6e+02 4.9 0.6 2 23 121 143 120 143 0.94 3 21 9.7e-05 0.022 17.0 2.0 2 23 166 187 165 187 0.96 4 21 0.14 32 7.1 2.1 1 23 191 213 191 213 0.97 5 21 0.0013 0.3 13.4 1.4 1 23 218 241 218 241 0.92 6 21 0.00039 0.089 15.1 1.9 2 23 249 271 248 271 0.94 7 21 0.00027 0.061 15.6 1.7 2 23 279 301 278 301 0.96 8 21 0.013 3 10.3 3.6 1 23 307 329 307 329 0.90 9 21 3.5e-05 0.0081 18.4 1.8 1 23 335 357 335 357 0.98 10 21 3.7e-05 0.0085 18.3 1.0 1 23 363 386 363 386 0.96 11 21 3 6.8e+02 2.9 0.1 6 16 413 423 411 425 0.92 12 21 1.2 2.7e+02 4.2 1.1 1 23 471 494 471 494 0.89 13 21 0.038 8.7 8.8 0.2 2 23 521 543 520 543 0.95 14 21 1.5 3.5e+02 3.8 5.8 2 23 566 587 565 587 0.96 15 21 0.19 42 6.7 1.0 1 19 591 609 591 613 0.87 16 21 0.0075 1.7 11.1 1.1 1 23 618 641 618 641 0.95 17 21 0.0055 1.3 11.5 1.6 1 23 647 670 647 670 0.96 18 21 0.0033 0.76 12.2 0.8 2 23 678 700 677 700 0.96 19 21 0.00081 0.19 14.1 2.5 1 23 706 728 706 728 0.97 20 21 0.00016 0.036 16.4 0.6 1 23 734 757 734 757 0.97 21 21 9.8e-06 0.0022 20.1 0.9 1 23 763 786 763 786 0.93
Sequence Information
- Coding Sequence
- ATGGCAGGTAATTCAACATCTATATTAGAAACAGAAGAAAATTTAGAAAGTGATAGTATTTTaattgaaacaaaaaataatgaaGTAAAACTAGCTGTAAAAGAACCGATTGCTAAAAAGTGGAAAGAAATTGAAAAGCATCGAGCTAATGTACACCAGATTTTAAGTAATTCTAACGCTACGCCGATCAGGTGTCGAGGTAGCGTTGGGTACGCTTGTTGCTTCTGCAGCGGTCAATATCCTAATCCAGCGGATCTAAAACAGCACAGTATAGAAAGCCACGAGAATATCAATGAAACTAAATACATGAAACGCAAGGACATGCACAAGTTCAACATTCAAATGGACATCACAGGCTTATGTTGTAAACTGTGCGATACAAATATTGATACAATTGAACTGCTAATGGAACATTTAAAAAACGTACACAAGAAAAAAGTGTTCACTGATATTAAGGTTCAACTCATACCGTTTAAATTTGAAAGTGATATCCTTAAGTGCTACATTTGTGGCAAAATCTTCCCGAAATTCCAAACTCTTCGACATCATATGAATGAACATTACAGTAATTATAAATGCAATGAGTGCGAAGCGGGCTTCGTGTGTCAGTCTATGCTTCATGAGCATTCTCAGATCCACAAGTTGGGCACGTTCAAATGTGATATCTGTCCGAAAGTTTTCAGTACGTTCCGAAAGAAAAGAAGCCACGAGAAGGGCGTTCATTCGCAAGtcgaaatgaaaaataaatgtcCGTACTGCGACGAAAAATTTAAGCACTACCGACAAAAGGAGAGGCATATGGCCGAAGCTCACGAGAAGGCCTTTCCGCCACTGAAATGCAAGGCCTGCGAGAAGTCATTTTTCACCCAAAGCAGTTTAAGCATACACGTGAAGAGATTTCACTTGGTTCACAGGCCCCACAAATGTCCGCACTGTGATAAACATTTCTTTTCTATGGCCGAGGTCCGGATACACTTGCCGACACATACCGGTGTTCGTACATTCGAATGCGATATCTGCCATAAAACATACGGCTTGAGGAAGACACTTAATGAACACATGCGTATACATATGAATGATAAGCGACATAAATGTGAGTTGTGTGGACAGGCGTTTATACAAAAGAACACGTGGCGAGTACACATGCGTGCTAAGCACGGTTTACCGCGTACCAAAATCGCTAAGCTCAAAGGTCAGACCGAACCTGAAACGAAATACGCAAACAAGAAGAGCGCGTGCAATAAATCTTATAGAAGACAGAAATCATTAGATGCTATGAAAAATTCTAAAATGGAATCTGATGAACCCCGAACAAAACACGGCGAAGAATTAGAAAAACATCGTACGAACGTGAGAGAGATATTGTTATGGTCTAATGCTACTCCCATCAGGTGTAGAGGTGGCATTGGTTACGCTTGCTGCTTCTGTACAGATCAATATCCAAACCCAAATGATTTGAAAAGACATTCTTTAGAGGAACACGATAGTGTTGTCGTATCCACGTTCATGAAAGGGAGAGATATGCACGGATACTTCGTAAAGTTAGATATAACAGCACTCACTTGCAAAATTTGTAATTCATCCATCGACACACTGGAACAGTTGATGGAACATCTAAAGAACGTGCATAATAAAAAAGTCGATCTGAGTATAAAAAATCACATGATTCCGTTCAAGTTTGAGACGGAGAATCTTCGTTGCTGCATTTGCCTGAACGTTTTCCATAAATTCCATGCACTGCAGGTCCACATGAACAACCATCGCAGAAATTACATCTGCGATGTCTGCGACGCGGGATTTGTTAACAGACACATGCTGCGTTGCCACAGTGACGGGCACAAGGTCGGAAATTTCTCTTGCGAACAGTGCTCCAAAGTGTTTAAAACAATTCGCATGAAGAAACTGCACGAACGGATCGTCCATAATTCAAATATGCCGCACAAATGTGGCTACTGTAACGAACGATTCAAAGAGAACTGGAATAAGAATGAACATCTGGCCAGAGTACACGGGGTACGTGACCCAGGAGTGAAATGCCAAGCGTGCGATAAAACATTTGACACTCAGCAGAGATGGTTGCTTCACATGAAACGGGACCACTTAATGCAAAGGCAGCACAAGTGCAATCGATGTGAGAAAGCGTTTTATGCGAAACGTGAACTGACGGATCATATGGTGAAACACACGGGCTTGAGAGAGTTTAGCTGCGAAGTCTGTGCCAAAACGTACGGACGACTAAAAACATTGAAGGAACACATACGAAGGTTGCATCCAGACGACGAGAGATTCAAGTGCCCCCATTGTGGTTGGACGTTCGTGCAGATTGCTAAGTTGAAAAAGCATGTCTTGGATAAACATGGAGAGAATTTGTTAAAGAATTCACTTTTAAAGTAA
- Protein Sequence
- MAGNSTSILETEENLESDSILIETKNNEVKLAVKEPIAKKWKEIEKHRANVHQILSNSNATPIRCRGSVGYACCFCSGQYPNPADLKQHSIESHENINETKYMKRKDMHKFNIQMDITGLCCKLCDTNIDTIELLMEHLKNVHKKKVFTDIKVQLIPFKFESDILKCYICGKIFPKFQTLRHHMNEHYSNYKCNECEAGFVCQSMLHEHSQIHKLGTFKCDICPKVFSTFRKKRSHEKGVHSQVEMKNKCPYCDEKFKHYRQKERHMAEAHEKAFPPLKCKACEKSFFTQSSLSIHVKRFHLVHRPHKCPHCDKHFFSMAEVRIHLPTHTGVRTFECDICHKTYGLRKTLNEHMRIHMNDKRHKCELCGQAFIQKNTWRVHMRAKHGLPRTKIAKLKGQTEPETKYANKKSACNKSYRRQKSLDAMKNSKMESDEPRTKHGEELEKHRTNVREILLWSNATPIRCRGGIGYACCFCTDQYPNPNDLKRHSLEEHDSVVVSTFMKGRDMHGYFVKLDITALTCKICNSSIDTLEQLMEHLKNVHNKKVDLSIKNHMIPFKFETENLRCCICLNVFHKFHALQVHMNNHRRNYICDVCDAGFVNRHMLRCHSDGHKVGNFSCEQCSKVFKTIRMKKLHERIVHNSNMPHKCGYCNERFKENWNKNEHLARVHGVRDPGVKCQACDKTFDTQQRWLLHMKRDHLMQRQHKCNRCEKAFYAKRELTDHMVKHTGLREFSCEVCAKTYGRLKTLKEHIRRLHPDDERFKCPHCGWTFVQIAKLKKHVLDKHGENLLKNSLLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -