Pgla009983.1
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- -
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000004.1:64695572-64699719[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.001 0.24 13.8 1.1 1 23 13 36 13 36 0.96 2 19 5.6 1.3e+03 2.0 0.0 2 20 64 82 63 86 0.69 3 19 0.45 1e+02 5.5 0.1 2 23 109 132 108 132 0.94 4 19 3.5e-05 0.008 18.4 0.2 3 23 139 160 138 160 0.94 5 19 0.019 4.4 9.8 4.9 2 23 166 188 165 188 0.93 6 19 0.00053 0.12 14.7 2.4 1 23 193 216 193 216 0.97 7 19 3.2e-06 0.00073 21.7 5.2 1 23 220 243 220 243 0.98 8 19 0.00051 0.12 14.7 0.2 3 23 251 271 249 271 0.96 9 19 7.8e-05 0.018 17.3 0.8 1 23 277 299 277 299 0.95 10 19 0.019 4.3 9.8 0.2 1 23 368 391 368 391 0.96 11 19 0.0019 0.44 12.9 0.2 2 23 422 444 421 444 0.95 12 19 0.0052 1.2 11.6 2.3 2 23 467 488 467 489 0.95 13 19 0.0021 0.47 12.8 1.5 1 23 494 517 494 517 0.95 14 19 0.037 8.4 8.9 0.6 1 23 522 545 522 545 0.93 15 19 0.003 0.69 12.3 1.0 2 23 551 573 550 573 0.92 16 19 0.00014 0.032 16.5 0.1 2 23 581 603 580 603 0.97 17 19 0.016 3.7 10.0 0.1 2 23 610 631 609 631 0.97 18 19 1.4e-05 0.0033 19.6 0.6 1 23 637 659 637 659 0.93 19 19 1.7e-06 0.00038 22.6 3.5 1 23 665 688 665 688 0.98
Sequence Information
- Coding Sequence
- ATGTCCACAGCGTTACCCTTTAAGTTTTTCGCGAAATATTACTGTTTTTATTGTTCGAAGAAATTCGTTGAATTTGACGAACTAAGGGAACACACTTTAGTAGAACATCCTGTATgcgatttaaaatcaaaaagcTTGAAGAAATGTAAAGGAGACAGAATAACCGTAAAAGTAGATATAACAAAACTAAGCTGTAAAATTTGCGGCCAGCCTATGGACAATTTAGACATTCTAATAGATCACTTAGTCTCACAACATGACGCCAACTACGACAAATCTGTAACGGGTTGTCTAGAGCCTTACAGGGTGATAAAAGACAACATGCCGTGCCCGATCTGTCCAAATCGCGTGTTCAGATACTTTGGAATTCTACTTAGGCATATAAACTCGGAGCACAGTAACAACAACAGGATCTGCGATTTTTGCGGCCGCAGTTTTAAGGACATAACAAATCTAAAGGTGCATATTATTAACGCACATAATACCGGCGCCTGCGAGTGTGATATTTGCGGCACGAAGTACAAGAATCAGTTGTGTTTGAGCCGGCACAAAGCGAAAAGCCACAACGCGAAAGATTACAAATGCCCGAAATGCCCAGAGTTTTTTCAGTCAGAGTACCACAACCAAAAACATCTGATTAAAGTCCACGACATCGGTCACAAGTGTACGTACTGCGGGAAAATGTTCACTAGAAACTCGTTCATGAAGGACCATATACGTAGGACTCATCTGAAGGAGAAGAATGTGATCTGTTCGGTCTGTAACGAGATATTCTTCGACAACTACCTGCTGAGAATGCATATGGTGAAGCACGAGGGCGAGCGGAAGTTCAACTGTGAAGTTTGCGGCAAAGCGTTTCTTAGGAGGAGCAACCTCAGTAAGCATAAGGAACTGCATCAGAAtgaaaaaaaagaaaaattggaGGGAAATAAATCAAAAGAAAGTAAAGACGAAAATTTCTTTCCAGGTGCAAAATTGAGCACAGTGGAGGACAAATATAAGAAAACTGAAATGGCGCGTAAGTTATTGATTAAGAGGCGTAATGTGGAATATGTTTTACAATACGGCAATGTTACGCCTTTTATGTGGTATAAGGGCAGGTACAGGTGTTTCTATTGCTCCGAGCCAATGAAAGATCCCGACTTGTTGAGGGAGCACACCGCCAAAGTTCATCAGTTCGCCAACCTAGAACTAGTCGTTTACGATAGGACTAAAAACAACAGGAACAGGGACGCGGCAGTCAAAATAGACGTCACTAGAATCTCCTGTAAGTTGTGTTCAAAGTCGGTGAACGATCTGGAGCAACTTATACACCACTTGATCATAGCGCACGACGCGGAATATGACGTCAGTGTGCCGAACTGTTTACTACCCTTCAAATTGGACAAGGAGCAACCAACGTGCCCAATTTGCAATATGAAATTCATCTTCTTTGAATATTTGCTCCGGCATTCCAATAAGCATCACCTTTCACACGACTATATTTGTGATGTCTGTGGTACCAGCTTCCAAGGGGAGAATCACCTGAAAATGCACAACCGTTATTACCATAGAGAAGGGGGGTACACTTGCGAACATTGTGGTATTACTCTAGCCACATTATCCAAAAAGATACTCCACGAGAAGAACGTTCACATGGTCAATTTATCAACGTGCCCCCATTGCCCGGAGACATTCAAGAGTCCGTACTTCAAAAAGTTGCATCTAGCAAACGTGCACGGTGTCGAAGAGTTGAAAATCAAATGTCCTTATTGCCCGAAAGTCTATCCCCAAGAGAGTATTATGTCCCGTCATATGAGACGGGTACATCTGAGAGAGAAGAACGTTGAGTGCGAAATTTGTGGAGACCGATTCTTCGGTCCTTATGACGTAAAATTGCATATGCTTAAGCATAATGGCGACAAGAAATTCGTTTGCGCGGTATGCGGGAAAAAGTTTTCCAAAAAGAACAATTTGAACACCCATTCGGTTATACATACTGGGAGAAAGAATTATACGTGCAACGTGTGCAATAAATCGTTTGCGCACCAACCTAATTTAAAGATGCATTACAAAACAAGGCATCCGCAAAACGAGGCTAAAAGTACAGAGCAAAATGTAAACATCATCGATGAATTAGATGAGggcgaaattgtgcaaatggagtTTGTCAGAGACGAATTAGAGGGAGCCGAAATAACCGGAGAATACATACATTAA
- Protein Sequence
- MSTALPFKFFAKYYCFYCSKKFVEFDELREHTLVEHPVCDLKSKSLKKCKGDRITVKVDITKLSCKICGQPMDNLDILIDHLVSQHDANYDKSVTGCLEPYRVIKDNMPCPICPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKDITNLKVHIINAHNTGACECDICGTKYKNQLCLSRHKAKSHNAKDYKCPKCPEFFQSEYHNQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVICSVCNEIFFDNYLLRMHMVKHEGERKFNCEVCGKAFLRRSNLSKHKELHQNEKKEKLEGNKSKESKDENFFPGAKLSTVEDKYKKTEMARKLLIKRRNVEYVLQYGNVTPFMWYKGRYRCFYCSEPMKDPDLLREHTAKVHQFANLELVVYDRTKNNRNRDAAVKIDVTRISCKLCSKSVNDLEQLIHHLIIAHDAEYDVSVPNCLLPFKLDKEQPTCPICNMKFIFFEYLLRHSNKHHLSHDYICDVCGTSFQGENHLKMHNRYYHREGGYTCEHCGITLATLSKKILHEKNVHMVNLSTCPHCPETFKSPYFKKLHLANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEICGDRFFGPYDVKLHMLKHNGDKKFVCAVCGKKFSKKNNLNTHSVIHTGRKNYTCNVCNKSFAHQPNLKMHYKTRHPQNEAKSTEQNVNIIDELDEGEIVQMEFVRDELEGAEITGEYIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -