Pgla058393.1
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- -
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000027.1:44519869-44520342[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-07 0.00011 23.7 0.0 2 39 22 62 21 68 0.89 2 2 2.9 9e+02 1.6 0.1 1 14 138 151 138 154 0.87
Sequence Information
- Coding Sequence
- atgaaaccTGTAAAATCATCCTTTACGAAAATTAAGGAGAAACAGAAAAGAAAGAGATATGAGCCCAATAATTTAACGAAAGCCCTACAAGCAATAATTTTTGCTATGTTATATGGTATGAGTCGAAAACTTGCAGCCAAAACGTATCAGGTGCCTCGAACGACATTAATTTACAGACTCAAAAATCCCCTGCATAATTCGCGTCCAGGTCCTACTGTACTGACAGAAGACGAAGAAAGAAATATAGAGGAATGGATTAATGATTGTTGCAGAAAGGGATTTCCCAAAAGAAAAGATGTTTTAAACAGTGTTAGGGCTTACCTAACAAAAAATAAGAGGCTTGGTAGGTTCACAAATGGTGAGAAATGGTTAAAACTGTTTTTGCAGCGTCACCCCAAACTTAGTTTTCGAACACCTGAAGCACTCACAGCCGCCAGCGCAGCAGTTTCAGAAAATGACATTAGGGGCTGGTAG
- Protein Sequence
- MKPVKSSFTKIKEKQKRKRYEPNNLTKALQAIIFAMLYGMSRKLAAKTYQVPRTTLIYRLKNPLHNSRPGPTVLTEDEERNIEEWINDCCRKGFPKRKDVLNSVRAYLTKNKRLGRFTNGEKWLKLFLQRHPKLSFRTPEALTAASAAVSENDIRGW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -