Pgla053297.1
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- -
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000025.1:18472000-18472458[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-08 8.3e-06 27.3 0.1 2 42 22 62 21 64 0.86
Sequence Information
- Coding Sequence
- ATGGTTAGATCAATAAAAAAAAGCCGTAGACGTCTCGGCAGTCGACCATATCAAAATTACACTCAAGATATGTTAAACCTTGCCAAACAATATGTAAAAGATAAAGCAATGTCTTCAAGGGAAGCCGCACGGCATTTCGGAATTCCAAGAGCTActattatatacaaattaaagGGAAAGCACCAAAAAAGTGTGGGATGTCCCACGCGCCTTAGTGACGAAGAGGAGCAAAAGATTGTCAAAGTAATAATTGCAGCTATTGATTTCGGATGCCCTTTGACAAAGCTGGATTTAAGACTGATAGTATatgattatttacaaaaaaatggcAGAGAAAGTGTCTTTGATGCTAAACTCCCAGGAAAACAATGGGTTTCAAGTTTCCTCCAGCGGCACGCTGAAAAACTGAGTGAGAGGCATTgccaaaatataaaaaagctaGAGCTGAAAAAACTGTAA
- Protein Sequence
- MVRSIKKSRRRLGSRPYQNYTQDMLNLAKQYVKDKAMSSREAARHFGIPRATIIYKLKGKHQKSVGCPTRLSDEEEQKIVKVIIAAIDFGCPLTKLDLRLIVYDYLQKNGRESVFDAKLPGKQWVSSFLQRHAEKLSERHCQNIKKLELKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155062;
- 90% Identity
- -
- 80% Identity
- -