Basic Information

Insect: Parnassius glacialis
Gene Symbol: -
Assembly: GCA_033319125.1
Location: JAVANC010000025.1:19800211-19802925[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.6e-08 4.9e-06 28.0 0.0 2 37 22 58 21 64 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.6e-08	4.9e-06	28.0	0.0	2	37	22	58	21	64	0.88

Sequence Information

Coding Sequence: ATGGTGAAACCTAAAAAGCAAAGCCGAAGACGCCTCGGTGCCAggtattacaaaaattataatgatgacatGTTAGATCTCGCAGTTGGgtacgttaaaaataaaaaaatgtcatcgaGAGAGGCTGAAAAACATTTTGGTATACCGAGACGGACCCTTCTGAACAAAGTTCAAGAGCTGCACCAAAAAAAAATAGGAGCTCCAACGCGACTTACTGAGGAAGAAGAGAAGAATATAGTAAAAGTGGCAGTTGCAACTGGTGACTTTGGTTGTCCATTATCAAAGCTTGACTTACGAATAATCGTATacgaatatttgaaaaaaaatgggCGTGAGGCAATTTTTCATGGAAATCTACCAGGAAAACAATGGATTTCGAGTTTTTTAGAACGAAATGCTTCAGAACTAACAGTAAGATCTtgccaaaatataaaaaaagcaagAGCCGAAAAAAGTGTTGAAGAATTTTTagattatttcaaaaatttagaaaaaactaTGAAAGACGTTCCCCCGTCAAACATATTAAACTTGGATGAAACAAATTTAAGTGATGATCCCGGATCATCGAAATGCATTTTTCGTAGAGGGGTAAAGTACCCTGAAAGGGTATTAAATTCAACGAAAGGAGCCATTTCATTGATGTTTTCGGCAAGCGCAGACGGAACGAACCTACCACCATATGTTGTGTATAAATCAGAAAATATTTATTCTGAATGGATAACAGGCGGTCCACGATGCGCAAGATATAACCGCACTAAATCGGGATGGTTCGATTCGTCCACTTTTGAGGACTACTTCAagacaatagttttaaaatggtCGGAAGGTTTGCCGGGAAAAAAGGTGGTCATATGTGATAACCTATCAAGTCATCTAAATGTGGACATTATCAAACTTTGCGAAGAGCATaacatatgttttgttttcatTCCTGCCAACTCCACGCATCTTACCCAACCCTTAGACGTGGCTTTCTTTGCTCCGCTTAAGAAAGCGTGGCGGAAAATTTTGCTGCAGTACAAAATGGAAAATCCCAATCAaacatctttaaataaaaatcatttcccgaagttgttgacgtctTTGATTAACGCAATAGACTTTACCAGAACAAACAATATCAAAAGTGGATTCAAAGCTACCGGAATTTGTCCTTTAAATCCACGTGAAGTGCTCAAACGGCTGCTGGAATATGCTGAAGAACTTGGAAATTACACAGTTGATAACGCCTTATTAAATTACTTGCAAAAGTGTAGACAACCGAAAGCAGTGAGTGTAAAACGCAATAAAAAAGTTTCAGTAGAGCCTGGCAAGTCTGTTTCAATAAGCGATTTCGGTTTATTGAGTTGTTCAAATCAAGAAGTTACAGAGACTCAAACCTCTAAAAAAAACAATGGAGTTGGAgcgaaaaaatcaaaaacaacaaaaaaaaagacttctattacaaatcaagataATCCAAAAAATAATGATCCCGTATTTGACCTCTTTTTAGACAATACAGCTATTGGACAGCCAATAAACGATAAAGATGAAACCGCTGGTATCTATAATTATTTGGAAGAAGATATTTTGGATGATAGCAATATACTGTTAAATCTGACATGTgacttttataaaattgataaacTTGAGGTATCGGACAGCAAAAAGGGTGAAACTGTAACAAAATGCATCTTAGATGAAAAAACTGTGATAATAGACACTAATAACTTTGacgaaattaatgaaattaatgaTGAGCCAGAACACAATGAAAACaaagtcggaacaagttgcactTTGGATAAAAATGGTAAGATAATAGCCATCAATGACAGTGATGACATATTCAATGATAACACCCATAAATTTACTGTTGAGTCTGAATACCAAGAGAAAGAGAATATATCAAGATGCATTCTAAATGAGAAAACTGGAGTTCTTCAATATACAATAGCCACCCGAGTGAAGCAAGTTATAAACAACAAACCAGTATTGCGAGATAAAATAAAGTTAACCTCATCTAAAGGTATGTACACTGAAACTGTGACAggacctaagaaaacaagaacATTTAAAAATGACACCAAGATTGCATCTGACAACATTTGCCctaacattgtaaatattttaccACGTCGTAGCACATCTGATTATGGTAGCACACAACAAATTATAGACTTAAATGAGAAGAGAGAAGAATTAAAtgcaaacaatttaaatataaaaaagtacaaaaatactAAACATCACGAAAAACTACAAGactcaaaacaaaatattttaaccgAAATAAATACTTCTACGAATGAAACTAAAGTTATTTTGGAGACTGGCAAAAACAATGGTAAagaaaacaaaacttttaaacatACTGATTTaaataacgaaataaataaatgtgcAGATACAAAACAAAACACCAATCGAAAGTCCGGAAAGAAAATAACTAAtcaaccaaataaaaaaagaaaaagcaacAAATCAACCATTGAACCAAAGACAAAACCAGCCCGCAGAACATACAAGAGAAATATAAGTGAAACAAGTAATAGTGATATCAACATTAGTACTCACAGTGATTCAGATATCTGTGATATAGAATCTGATAAGTCCGACAAAGACATTCAAAGTTTAAATACAAAACAGCCTAAAACAGAGTCAATGAAagataataaaacaacaatagcAACGGAAACAGAAAAAACTTCATCTACGACGACCATTTAA
Protein Sequence: MVKPKKQSRRRLGARYYKNYNDDMLDLAVGYVKNKKMSSREAEKHFGIPRRTLLNKVQELHQKKIGAPTRLTEEEEKNIVKVAVATGDFGCPLSKLDLRIIVYEYLKKNGREAIFHGNLPGKQWISSFLERNASELTVRSCQNIKKARAEKSVEEFLDYFKNLEKTMKDVPPSNILNLDETNLSDDPGSSKCIFRRGVKYPERVLNSTKGAISLMFSASADGTNLPPYVVYKSENIYSEWITGGPRCARYNRTKSGWFDSSTFEDYFKTIVLKWSEGLPGKKVVICDNLSSHLNVDIIKLCEEHNICFVFIPANSTHLTQPLDVAFFAPLKKAWRKILLQYKMENPNQTSLNKNHFPKLLTSLINAIDFTRTNNIKSGFKATGICPLNPREVLKRLLEYAEELGNYTVDNALLNYLQKCRQPKAVSVKRNKKVSVEPGKSVSISDFGLLSCSNQEVTETQTSKKNNGVGAKKSKTTKKKTSITNQDNPKNNDPVFDLFLDNTAIGQPINDKDETAGIYNYLEEDILDDSNILLNLTCDFYKIDKLEVSDSKKGETVTKCILDEKTVIIDTNNFDEINEINDEPEHNENKVGTSCTLDKNGKIIAINDSDDIFNDNTHKFTVESEYQEKENISRCILNEKTGVLQYTIATRVKQVINNKPVLRDKIKLTSSKGMYTETVTGPKKTRTFKNDTKIASDNICPNIVNILPRRSTSDYGSTQQIIDLNEKREELNANNLNIKKYKNTKHHEKLQDSKQNILTEINTSTNETKVILETGKNNGKENKTFKHTDLNNEINKCADTKQNTNRKSGKKITNQPNKKRKSNKSTIEPKTKPARRTYKRNISETSNSDINISTHSDSDICDIESDKSDKDIQSLNTKQPKTESMKDNKTTIATETEKTSSTTTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01155064;
90% Identity: iTF_01156289;
80% Identity: -