Basic Information

Insect: Parnassius glacialis
Gene Symbol: cheC
Assembly: GCA_033319125.1
Location: JAVANC010000014.1:21765142-21767910[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.5e-13 1.7e-10 42.3 0.0 1 40 15 53 15 57 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.5e-13	1.7e-10	42.3	0.0	1	40	15	53	15	57	0.94

Sequence Information

Coding Sequence: ATGCCAAAGTCTGCAAAAGGagaagtatataaaaaaaaatatactgagGAAGATTTAGAAGCGGCAATCCAAGCAATTCAAAATGGTATGTCTAAAAGAGCAGCTGCCATAGTATTTGGGATACCTCGAGGAACTTTGCAGTTTCGATTACAAGGGAATTTTTTAAAAACGAGACCGGGTCCGCCTACAATCCTTACAAATGACGAGGAAAACACTTTGGTTGAGTGGATAATACAAAGCAGTAGAAAAGGTTTTCCACGGCGTAAAGAAGATCTATTACATAGTGTTACTGACTTTCTAAAGAAATCACCTAGGCCAaataattttatagataataagcCAGGAGAGGGGTGGTACAAGTTGTTTCTTAAACGTCACCCCGAAATAGTACAAAGAACGGCTGAAGCTGTTACTTCGGCAAGTGCCAATGTATCAGAAATGAACATCAAAAAATGGTTTCAGCAAATTGAAACTTGGTTAGAAGAAGAAGAATTCCTGCATATCCTACGAGATCCTAAACGTATTTTTAACGGTGATGAAACAAATTTCTTGTTATGTCCAAAAACCTCCAAAGTTTTAGCCCTAAAAGGTACTCGCGACGTGTATGAAGTGGATAACGCGCCTGCGAAATGTGGACTGACAGTGATGTTCACATTTTCGGCTACCGGAGTTATTACACCACCGATGATTATCTACCCACTCAAACGTAACAGAGCAGATATTACGGCGTCTGTACCACCAGAATGGGGTATAGGTCTGTCATCAAATGGATGGATGAACAAAGATCTATTTTTACAATACATTACTAATGTTTTACATCCACATCTtgtaaaagaaaatacaaaattcCCCATTCTTCTGTTTGTTGATGGACACAAAAGTCATATCAATTTTGAACTTAGCAAAGCATGCAAAGAAAGAGGTATAATACTTATAGCATTATACCCAAACGCGACTCGCATCTTACAACCCGCAGATGTAGCTGCCTTTAAGCCTATAAAAAGTGCATGGAAAAAAGGAATATTAGAATGGAGAAGGGAAAATGCGACaaaaaatttgacaaaaattGATTTTGGACCAATACTAAGCATtgtattaaagaaatatatagacaaacaaattattataaacgGATTTCGAGCTTGTGGATTGTATCCTTGGAATCCAAATGCAATTAACTACCAAAAATGCCTTAGCAAAAATGTGACCCAATCGACCAGAATTCAAGAAAACAGACCACAAAAGGCAATTACATTCACAGACTTTGAAAAAATCGTGGGACAAAACATCGTATCCCGTCTTACTTCTGAGACACCCGATAAATCAAATTGTTTTTACAAAGCACTAAAAGACATATACGACCATTTGAAGGGCAAAAATATAGAACAGGAAGACAGTACTACTTCAAgcgattatttagtaattgaaaATGAATTGATTACAATAAATGACATACCGATCGTAATTTCAAACTCCAATAATATTGAAGAATCTCATACTGACACTATTGAAACTGAAACTACAGAGTATACTGAATTACTTACAACAGACTTATTTGACGATTTGGAGACCCTAAACCTAACAGAGTCCTACGATTTGTCAGCAGATATTCGGAATACTATTGAAATGAATAATAATTACAAACAGAGCCAACTTATAGCGAATTCAGATTCAGACACTCAAAATGacttaaaaaatgaaatattaaatgtTCTGGAACCTACCAGTGATAATGTCGTTAAAGGCCCTAATCAATTGATGTCGCCTAAATTAAAAGCTATTGCTGAAATGTATAATGTTGAAAAACCGAGCGAAAGTACAGGGACTGTTAATGTTCTAAACAAAGAATCAAATGAAATAACAAACCCAAATTTATTAGTAATAGATAACGTTACAGAGACTattaataaatcaaatattaataaCCAAAACCAAATAGCAGAGacagaaaataacaaaaaatatgattttaatttTGACAATGCTAAATGCGATAACGAAATGACACCACCGAAATTAAAGGAAATTCTCAATTGGCCCCAGACACCACAACGTAAAGGGAAAATTATGACCCACAATCCCATTTATGTCTTGACTAGCCGCAAATGGCTTGAAATcgaggaaaagaaaaaaaatgagaagaaaacaaaagaaaaagagAAAGAAGAACGTAAAAAAGAGAGAGAAGAGAAAAGAAAACAGACAGTAAAAAgcgtaataaaaatatcaaagcaTACCAAAAATATGAAAATCGATTCGGAAAACTTAGAAAACATTGAAATATTAAGACAAGAAGAAAAAGTTTCTAAGcatctattaaataaaaactcaaaaattgaAGAAAATAACAGAAAAAATAAAGAGGAAACAAAAACCGAAATAAAAGAACGAAAAAGAAAATATGATAAATCAATAACCACTGCatacagtaaaaaaattaaaatagatgtATGTGATAAAGAGACTGAGAACAATATTTTTAAGTGTGATGATACCAAGACTGAGTTATTAGATATAGACCAGATTAAAAAAACTACTCCAAAGCCTAATAAAGAAAGTAacattaaaattttgtctgttgtGAAGGCGCCAGTTATGCATAAtccaagaaatatttttaatgaaaacagTTGCATTGATACAAAGGTACCATTCGTTTTATCCAAACCCAACTCTATACTAAACAGAAGAGAGACATTCCGTAATGAAGAAGAACTTAGTAATTTTCTTAATAATGAAAACCTAAATATGGACGAAAGctcaatgtaa
Protein Sequence: MPKSAKGEVYKKKYTEEDLEAAIQAIQNGMSKRAAAIVFGIPRGTLQFRLQGNFLKTRPGPPTILTNDEENTLVEWIIQSSRKGFPRRKEDLLHSVTDFLKKSPRPNNFIDNKPGEGWYKLFLKRHPEIVQRTAEAVTSASANVSEMNIKKWFQQIETWLEEEEFLHILRDPKRIFNGDETNFLLCPKTSKVLALKGTRDVYEVDNAPAKCGLTVMFTFSATGVITPPMIIYPLKRNRADITASVPPEWGIGLSSNGWMNKDLFLQYITNVLHPHLVKENTKFPILLFVDGHKSHINFELSKACKERGIILIALYPNATRILQPADVAAFKPIKSAWKKGILEWRRENATKNLTKIDFGPILSIVLKKYIDKQIIINGFRACGLYPWNPNAINYQKCLSKNVTQSTRIQENRPQKAITFTDFEKIVGQNIVSRLTSETPDKSNCFYKALKDIYDHLKGKNIEQEDSTTSSDYLVIENELITINDIPIVISNSNNIEESHTDTIETETTEYTELLTTDLFDDLETLNLTESYDLSADIRNTIEMNNNYKQSQLIANSDSDTQNDLKNEILNVLEPTSDNVVKGPNQLMSPKLKAIAEMYNVEKPSESTGTVNVLNKESNEITNPNLLVIDNVTETINKSNINNQNQIAETENNKKYDFNFDNAKCDNEMTPPKLKEILNWPQTPQRKGKIMTHNPIYVLTSRKWLEIEEKKKNEKKTKEKEKEERKKEREEKRKQTVKSVIKISKHTKNMKIDSENLENIEILRQEEKVSKHLLNKNSKIEENNRKNKEETKTEIKERKRKYDKSITTAYSKKIKIDVCDKETENNIFKCDDTKTELLDIDQIKKTTPKPNKESNIKILSVVKAPVMHNPRNIFNENSCIDTKVPFVLSKPNSILNRRETFRNEEELSNFLNNENLNMDESSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01156210;
90% Identity: iTF_01158626;
80% Identity: -