Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.18 56 5.4 0.0 27 39 2 14 2 17 0.88

2 3 3e-13 9.1e-11 43.2 0.1 4 45 34 76 31 76 0.95

3 3 2.7e-18 8.1e-16 59.3 0.0 1 44 83 127 83 127 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.18	56	5.4	0.0	27	39	2	14	2	17	0.88
2	3	3e-13	9.1e-11	43.2	0.1	4	45	34	76	31	76	0.95
3	3	2.7e-18	8.1e-16	59.3	0.0	1	44	83	127	83	127	0.96

Coding Sequence: ATggGTATCCCGAGCAGCACCCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCAGCGCCGACGTCGTGGCGCCGCAGCGACCTGCAGCACGCGCTCGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGTACTCTGTATGGAAGATGCAAACGAGAAGGTATCGAGTTATCTCGATCCAACCCTACGCCTTGGTCGGAAGACGCTATGGGGGAAGCGCTAGAGGCAGTGAGGGTCGGCCAAATGTCCATCAACCAGGCGGCAATACATTACAACTTGCCGTACTCCTCGCTGTACGGCAGATTTAAGCGGTGTAAATATCAGCTTCAGGGGCAATCAGTTCACCAATCAGAAATGCAGAAAAATATAGAAATAGATCATCAACACCAACATCAAGATCCGGAGCCCTTCTACCATTCTTTACCATCTCACGCTGATCCTAACACGTCAAACGATCAAATGGACGTTCAAATACCGTACAGTCAACTATTGAGTGAAGTCCACGATACCATGCACGGTCACTTGGTACTGCAGGAGCAATATGGCGGGCAGGGGCTTTACTACACGCAAGGTTACTACAGTGGGATGGCCACCAGTTGA
Protein Sequence: MGIPSSTLYKIARREGIRLAAPFNAAPTSWRRSDLQHALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLQGQSVHQSEMQKNIEIDHQHQHQDPEPFYHSLPSHADPNTSNDQMDVQIPYSQLLSEVHDTMHGHLVLQEQYGGQGLYYTQGYYSGMATS

Sequence clustering based on sequence similarity using MMseqs2