Basic Information

Insect: Parnassius apollo
Gene Symbol: -
Assembly: GCA_907164705.1
Location: CAJQZP010001262.1:193508-203534[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.044 4.5 8.6 0.5 3 23 38 58 37 58 0.97

2 13 2.4e-05 0.0025 18.8 2.1 1 23 96 119 96 119 0.96

3 13 0.0033 0.33 12.1 1.2 1 23 121 143 121 143 0.98

4 13 0.061 6.2 8.1 0.3 1 23 178 200 178 200 0.95

5 13 1.3 1.3e+02 3.9 4.8 1 16 258 273 258 280 0.81

6 13 0.013 1.3 10.3 0.9 1 23 286 309 286 309 0.92

7 13 1.5 1.5e+02 3.8 6.6 1 23 319 342 319 342 0.92

8 13 0.0087 0.88 10.8 0.2 2 23 348 371 347 371 0.96

9 13 0.84 85 4.5 1.7 3 23 378 398 378 398 0.97

10 13 0.0011 0.11 13.6 0.6 1 23 403 425 403 425 0.98

11 13 0.00037 0.037 15.1 1.1 1 23 431 453 431 453 0.97

12 13 0.00041 0.042 14.9 9.2 1 23 459 481 459 481 0.98

13 13 4.2e-05 0.0043 18.1 1.6 1 23 487 510 487 510 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.044	4.5	8.6	0.5	3	23	38	58	37	58	0.97
2	13	2.4e-05	0.0025	18.8	2.1	1	23	96	119	96	119	0.96
3	13	0.0033	0.33	12.1	1.2	1	23	121	143	121	143	0.98
4	13	0.061	6.2	8.1	0.3	1	23	178	200	178	200	0.95
5	13	1.3	1.3e+02	3.9	4.8	1	16	258	273	258	280	0.81
6	13	0.013	1.3	10.3	0.9	1	23	286	309	286	309	0.92
7	13	1.5	1.5e+02	3.8	6.6	1	23	319	342	319	342	0.92
8	13	0.0087	0.88	10.8	0.2	2	23	348	371	347	371	0.96
9	13	0.84	85	4.5	1.7	3	23	378	398	378	398	0.97
10	13	0.0011	0.11	13.6	0.6	1	23	403	425	403	425	0.98
11	13	0.00037	0.037	15.1	1.1	1	23	431	453	431	453	0.97
12	13	0.00041	0.042	14.9	9.2	1	23	459	481	459	481	0.98
13	13	4.2e-05	0.0043	18.1	1.6	1	23	487	510	487	510	0.98

Sequence Information

Coding Sequence: ATGGCTTCACCCACCTATTTGAGTTCTGTTAATGAGACGCAAGCAAATCTATTCACAGCTTCAAACCAGAGCAGAAAGCTCACAACCATTGATTTAGTTGGTGGCATTTTGTGCAATGTCTGCTACACAACATTTGGAAATAAGAAAGATTATGATGCTCATTACGTAAAACATAATGGAGACAGTAAGGGAATTGTCTACACATGTGTGGTGTgccataaaaatattacaggcTATCCGAGTTTCAGAGGTCACTGTTACACTAGTCATGTAATGAAAGACAAatttaaGTGTGATCACTGTGACAAGCAGTTCTCAAAATTGACAGCCCTGAAAGATCATATTGATATTAAGCACAAGTTCAAATGCACCTCTTGCAGTCAAGAATTCCAATCAAAAAAAGAGATGCAGATACATCAGATTATACACAACAATAGTGATAATCCACCTTACAATTGTCAGTCATGCGAGAAGCAAATCAACAGCCTCGATGGTTGTGAATATCATATTGATTTGCACACCTCCTTCACATACTGCTGCCCTATTTGTGGTGAAGCTATAAAAATGAAACAATCAGCCGTTGAGCACCTCAAACAACATTTTGGCGATGTGATCATAGATGAAATAATTTCGGGAGTTGAGGAAGCACCTGATGATGATTTTATAGAGAAGCTTGGTGGAATATTTTGCTGTATTTGCTCAACTGTGCACAAAAACCGGATTAATTTTGATGCACACTTTTCACTGAAGCATGGGTGTCAGGATATAGTGTATACATGCAATGAATGTAAAAAGCAATTTGACAAGTATTCAGTTTTCGGTAATCACTGCTACAATCACTTTATGAAAAACAGATtcgaGTGTGATCAATGTTGCAAAGCATTTCCACGTCTGTCGCTACTCGCAACCCACACAGAGGCTTACCATGGTAGCGGTTTGTCTGGGACAAAGCCATTTTCGTGCATGTGTTGCGGCCACCGCGTTTGTACTCAGAAAGCGCTGCGGACGCATCTGCGGGAACAACACAACATAACCTGTGTGCAGTGCCCGCAGGAGGGATGTGAGAGAATtttcgaAACACCGAAAGAACTGACGTTCCATCAACGCTATCATAATAATACGCAAAATTGGTGCCGTCAGTGTGGTCTCCTCTTTACCTCACTATCTGCATGTGAGAAACATCTTGATATGCATAGGAAGAAGACTTACTCTTGTCCCATTTGTGGCCGCAACTACGGGGAGAAGCATTTGGTTATAAAACATGTCTCGAAACACTTCGAAACTGTCATCCACATATGCAAAGTCTGTGGAAAGACATACAACGCCAAAAATCGCCTTGTCCAACACATTAAAGTCCATTCAGACATGAAGACACACACTTGTACCCATTGCGGCAAAGGATTCGTAAAACTCTGTCATTTGCAGCAGCATTTGAATACACATACTGGTGTAAGGCCTTACAAATGTGTCGCTTGTCCAAAAACGTTTGCAAGCTATCCGAACTTGCATAAACATTTGCGTAGGATGCATAATGTTGACGGAAAAGGCCTCAAGAAGACTCTTTCTGAAGCTGCAAATGAAGGAAACAGTGAAAACTCAACAGATGCAAGTGGTTCCAAAGAGAGCACTGTTAATTTCGAAACCGCATCAATTGATAACAATACAGATTTTACAAACAATGACTCGAAAATACATCCATATAAATTTGTTGAATCTGACGATAGTACAATGGAGTCAAATAGTATTGATCACATACTGATAGAAAAGGAGTTGCAAATTTTCGAAGCTTCAACAAGCAGTACTAACGTACAACCAGTGAACACAAAACTGTTTGTGTCAGAAGGCCCTCAAGAATCCCCAGTCATCAATGAACAAATGTCTTCCACCATAAACTATCCACTTGAATATGGACCGGAATTCAACAGTGGCCCGGACACCACCAATGGTTCCTGCTTCATTGACTTGGACGAACATATCCTCCCACACATAGACCCCCTCCTCACCATCAGAAATGAAGAACCCCTTCACACCATGTATGTTCAAAGTCTACCTGACTTTCCATATGAAAGCTTCGATAACAATTTAAACACCAACTTCGATTCGAATAAGTGGGAGCCTGTTATAACAAAAGTCTACCAAGACTACACATGTGGTTATGGGGACATGACTGACGACAGTAAGCTATCTATTATGAACACTGATATATTTTGA
Protein Sequence: MASPTYLSSVNETQANLFTASNQSRKLTTIDLVGGILCNVCYTTFGNKKDYDAHYVKHNGDSKGIVYTCVVCHKNITGYPSFRGHCYTSHVMKDKFKCDHCDKQFSKLTALKDHIDIKHKFKCTSCSQEFQSKKEMQIHQIIHNNSDNPPYNCQSCEKQINSLDGCEYHIDLHTSFTYCCPICGEAIKMKQSAVEHLKQHFGDVIIDEIISGVEEAPDDDFIEKLGGIFCCICSTVHKNRINFDAHFSLKHGCQDIVYTCNECKKQFDKYSVFGNHCYNHFMKNRFECDQCCKAFPRLSLLATHTEAYHGSGLSGTKPFSCMCCGHRVCTQKALRTHLREQHNITCVQCPQEGCERIFETPKELTFHQRYHNNTQNWCRQCGLLFTSLSACEKHLDMHRKKTYSCPICGRNYGEKHLVIKHVSKHFETVIHICKVCGKTYNAKNRLVQHIKVHSDMKTHTCTHCGKGFVKLCHLQQHLNTHTGVRPYKCVACPKTFASYPNLHKHLRRMHNVDGKGLKKTLSEAANEGNSENSTDASGSKESTVNFETASIDNNTDFTNNDSKIHPYKFVESDDSTMESNSIDHILIEKELQIFEASTSSTNVQPVNTKLFVSEGPQESPVINEQMSSTINYPLEYGPEFNSGPDTTNGSCFIDLDEHILPHIDPLLTIRNEEPLHTMYVQSLPDFPYESFDNNLNTNFDSNKWEPVITKVYQDYTCGYGDMTDDSKLSIMNTDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00204651;
90% Identity: iTF_01160011;
80% Identity: -