Papo026167.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- RREB1
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001576.1:4388804-4432931[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.044 4.4 8.6 0.3 1 23 190 213 190 213 0.96 2 12 7.8 7.9e+02 1.5 1.1 1 11 255 265 255 276 0.86 3 12 0.019 1.9 9.7 0.1 1 23 404 426 404 426 0.97 4 12 0.001 0.1 13.7 0.4 1 23 435 457 435 457 0.99 5 12 0.00062 0.063 14.4 2.0 1 23 463 486 463 486 0.97 6 12 0.0025 0.26 12.5 1.6 1 23 839 862 839 862 0.96 7 12 0.00021 0.021 15.9 1.3 2 23 1053 1074 1052 1074 0.97 8 12 0.021 2.2 9.6 5.3 1 23 1080 1103 1080 1103 0.97 9 12 0.18 19 6.6 1.4 1 23 1136 1160 1136 1160 0.90 10 12 0.4 41 5.6 0.2 1 23 1184 1207 1184 1207 0.86 11 12 0.019 1.9 9.7 0.3 2 23 1247 1268 1246 1268 0.92 12 12 0.024 2.4 9.4 5.3 1 23 1274 1296 1274 1296 0.97
Sequence Information
- Coding Sequence
- ATGCGCTCTCTCCTTCTCCCCGCGCGCCCGGTCGCTATTCTCCACCAATCGGCAGCCATCTTCTGCTCCCCCGAGAGCAAGCGACAGTGCGTACTCTCATCACAATCACAAGGAGACGACATCTCGCCGCGCGAGGTTGTCGTTCCTGCGCAAGATGCGCCGTACTTACGCTGTGAAGTGAGAGACTGGGACAGATTCTGTGAAATTGGACTTATTGTTGAAAATTTGAGCGGGCTGATATCGCGAAAATTATCCACGATTGGGCGCAAACGCGGTCGTACGTCGCGGGCAATGCAGGGAGCTGCCAACGTCCCCGCGCCTCCCGCGGCCGAGCCTCCAGCTTCCCAACaaatcaaaACAGAAGTCATCAGTGAGGCAAAAGTCGAGACGGAGGGACAACAAGACGAAAAAATGAAGTTGGAAAATGAGCCTCGTGCTATTCGCACTACCAGCATCGACAGCGATAATAGATCAGATCGCAGCGAAGAAGAAGATTCCAGAAGGGCACGGAAAAGGGCAGCGTCAACGTCCCCATCACCTATTCCATTAGACAAAAGAACAGCTCGCTTTGAGTGTCCGAAATGCCTACAGCGGTTTGATTCAGCAAATGCTTTTGACATTCATCGTTTCACAGCGCATGGAGATGAAACTAGAAGTGGTTATGATGATCTTACTTTTATCGATTTCTCTGGCAAAAAATTCCCTGAAATAGCGCGAGGAGTTTGCGAACGCAACACTCATATTTCCATAGCAGAGCAGCGCTATAAATGTGATTTTTGCACGCGAGAGTTCCCCTGTGGCCAAGCCCTGGATATTCATAGAAAATCCTGCTCTAATTCCGCAAAACTTACCAGTCCAGAAAGAGAGCGTAGGGAAGACTTCTTTGCAAAACTGGATCTAAGGAACAGGTCTTTCGGTATTCCGGGTACTTTGACACCACCTATGGAGAGATTTACACCTAAATTCGACGACGCACACTTAGGTGGCAACGGTATAAGGCATATCGATACCGCTAGGGACTTGGCTGATATTCAGTCAATCTTAAACGTCACGTCAGCTGGAAGTCTActagagaggctaactgggactCGGGTCGCTTTAGAAAATGCTGTACTTACACCTCCTGATACAATAGTAAAGGAACGTGAACAAGAAGAAACTCAGGACAACTTTGCAGCAGAATTCAGAAGAATGAAGCTGCGTGGTGAGTTCCCATGTCGATTATGTCCAGCAAAGTTTCCCAATCTAAGAGCATTAAAGGGACATAACAGAGTACATCTCAGTGGAACTGGACCCGGTCCTTATCAGTGCAACATGTGTCCTCATGCGTCTTTGGACAAGGCAGCTTTAGTTCGCCATATGCGAACTCATAATGGAGACCGTCCTTACGAATGCGCGGTTTGCAATTACGCATTTACCACTAAAGCTAACTGTGAGCGTCACTTACGTAATCGCCACTCAAAGGTAACTAGAGAAGATGTCAAACGCTCTATTATTTACCATCCATCCGAAGATCCAAATAATGATGAAGTCAATTCAAAGTTAGCTCGAGAAGAAGTAAAAAGATCGCTCGCGTTTCACACACCTGAAATTGAACGACGCAATGAATCAACTGGCCGTGACACTCCATTAACACACTACACTCCGAGTTTCATTAGTGACAGACACCCAGTAACTGCTTTAGTGACTAAAGCATTGCCAGAATCACCCACTTTGACACCAAGCGAATCTGAACAATCTCTACCTAGAATCAAAGTTAAGGGTATTGGACAGTTGACGCAAATACCTGAATTCAGGCAACCAGAGGCTACATTTAAAACCAATGACATTCCACCAGAACCTTACGATGAAGACGCACCAGTTGATCTCAGTACAAGTGACAATAACAGCTGCGATGTCCTCGATCTCAGTAAGAAAAAACGTGACGTAGATGAAGATGAACCTAAATCAATTCCTCAACCGGGTTTTGAGGCAAACTCTGCTACAGCTGCAGCATCAGCAGCAGCAACAGCGTTCGAAAAGACGAGATTTCTTCTAGCGCAGCAAAGACTTTTTGAATCGTCTCTCCCAAAACTTGATCCCGCTTATTACGCAACTCAGCTATCTCAACTATACGCTGGTACTGTTCCCGGACTTGCTGGCCTACCTCTTCCGCCGTCTGCATTTCCAATCAATCCTTACTTTCTTCAGACATCGTTTTTTCCTCACCCAACTGATTCACAGGAACTTGCCGAAATAAAACAGCgtatacaaaaagaaataattCGCGGTCTTAGCATGTCAGGAGGACGATTAGTCAATGGTGACCAGGAAACTCAACCCAAACAAGAACCTGAAGAAGAAGACAACAAATCTCTCCCTCAAACTACTTCTCCTACTCCACCTCCTCGTATTGAATCTCCACGCCCTTTAAGTAGTAACATCGTGCCACAAACCGATTCTGTTAAGATGGTCATTAAGAACGGTATTCTAATGCCAAAGCAAAAACAAAGGCGCTATCGCACTGAAAGGCCATTTTCATGTTCTCAATGTTCAGCCAGGTTTACTTTACGCTCAAACATGGAACGTCATGTAAAACAGCAACATCCACAGCATTGGAGCGTTCGAAGACCAACTCCAAGAGCTCCTCCGCCGTATCCCACCCCAGATAACTTGGCTGACCGCGTAAAATTCGCTCTCCTCGCGCGACATCTTGAAAGACCGTTGCAACAAAATGATCGGTCCCCAATCCGTAGAGATTCAGACGAAGTGGCTGACAACGAGGAAGACGAGGACGATACTTTAGTAATTGATGAAGAGCCAGAGACTGATGTCAAGTCTTCAGAGCATACCGCAGCGCACAAGGCTGCTGCGGAAATTTTAATGGCCACACGCCAACAAGAACTTCACAAAGATTTCGATCTTAAAATAGCTGGCAATCTAATCAACAAACCTGTACCCATTACCACCGATAAAACAGAAACTGGAACGGACCCTATCCAAATTTCTGAACCTGTGACTGTCCCAACGCGCAGTGATGAAGAGGAAGACGAGGAAGGTCTTGTTGCATCAACTAGCGAAGGCAATAATTCTGGAAGCGATGAAAATAAATCGGAATCCGACACAACTCTACCGCCTAAGAAGAAATCCGCGTATAGTCTGGCCCCAAATCGCGTCTCATGCCCGTATTGCCATCGGAAATTCCCCTGGTCCTCTTCACTCCGTCGTCACGTTCTAACACACACCGGACAAAAGCCTTTCAAATGCCCCCACTGTCCGCTCCTTTTCACCACAAAATCCAACTGTGACCGTCATCTCTTACGAAAACATGGCGGCTCCGCAAGGGCTATCTTAGCAGAACCCATTTCTGACTCATTGTCTGTACCTCAAAATACAAATGAAACTAGAACGGTCCCAGAAAGACCTTTCAAATGCGCCTCATGTCCCACCAGCACGTTTTCGTCCATGGAAACTCTAAAAAAACATATGTCATCGCGTCATGGGACAAGTGATTCTCAACCCGGGTCTCCAAACCCTGAAGGAAATGAGGAAGCACCGGATGGTCTAGTCTTTAAGTGCCATCTTTGTGAGGGATCTTTCGGAGACAGAAGCAGTGCTCTTGGACATTTGGCAGCTAATCACGCTGCAGAATACGAGCAATTGGTCAGCAAAGGGGCGTTAGACGGTACGAGCGACCGAAGCGAAAGCGCAGATGATGACGAAAGGGGAAAATTTCCTGATCATGCCAATAGAAAGGTGGTTTGCGCCTTCTGCATTCGTCGCTTCTGGTCTGCGGAGGATCTTCGTCGCCACATGAGGACGCATTCCGGCGAACGACCTTTCGCCTGCGACCTTTGTCGACGACGTTTCACGTTGAAGCACAGCATGTTGCGTCATCGCAAGAAGCATCGCGATGAAATCACCGATGATGAGGAAGCTACACCGCCTGACACACCGCTGGAACCTGAAAATGTTACTAACGGATACCGCTACCAAGAGGATGACGGATCGGGCAACGAGATACCGTGCAACGTTAACAACAACAATTCTCCACCATCCGCCCCTTACGACAAGAAGCTGAAGCTCGAAATGACTTCACGAAAGTACTCATCAGAGGCCGAAAATGACGCTGAAAATGGTGGCGATCTGATCGGTAAACTCCTTGGTATACCGGACAAGACTATCATAAACAAACTTCTTTCCTCCGCGGACGAGGCGGCGAAATTCCTCGGGGTGAACAAATGA
- Protein Sequence
- MRSLLLPARPVAILHQSAAIFCSPESKRQCVLSSQSQGDDISPREVVVPAQDAPYLRCEVRDWDRFCEIGLIVENLSGLISRKLSTIGRKRGRTSRAMQGAANVPAPPAAEPPASQQIKTEVISEAKVETEGQQDEKMKLENEPRAIRTTSIDSDNRSDRSEEEDSRRARKRAASTSPSPIPLDKRTARFECPKCLQRFDSANAFDIHRFTAHGDETRSGYDDLTFIDFSGKKFPEIARGVCERNTHISIAEQRYKCDFCTREFPCGQALDIHRKSCSNSAKLTSPERERREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDAHLGGNGIRHIDTARDLADIQSILNVTSAGSLLERLTGTRVALENAVLTPPDTIVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHSKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPEIERRNESTGRDTPLTHYTPSFISDRHPVTALVTKALPESPTLTPSESEQSLPRIKVKGIGQLTQIPEFRQPEATFKTNDIPPEPYDEDAPVDLSTSDNNSCDVLDLSKKKRDVDEDEPKSIPQPGFEANSATAAASAAATAFEKTRFLLAQQRLFESSLPKLDPAYYATQLSQLYAGTVPGLAGLPLPPSAFPINPYFLQTSFFPHPTDSQELAEIKQRIQKEIIRGLSMSGGRLVNGDQETQPKQEPEEEDNKSLPQTTSPTPPPRIESPRPLSSNIVPQTDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRAPPPYPTPDNLADRVKFALLARHLERPLQQNDRSPIRRDSDEVADNEEDEDDTLVIDEEPETDVKSSEHTAAHKAAAEILMATRQQELHKDFDLKIAGNLINKPVPITTDKTETGTDPIQISEPVTVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTTLPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPISDSLSVPQNTNETRTVPERPFKCASCPTSTFSSMETLKKHMSSRHGTSDSQPGSPNPEGNEEAPDGLVFKCHLCEGSFGDRSSALGHLAANHAAEYEQLVSKGALDGTSDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDEITDDEEATPPDTPLEPENVTNGYRYQEDDGSGNEIPCNVNNNNSPPSAPYDKKLKLEMTSRKYSSEAENDAENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961349;
- 90% Identity
- iTF_01155833;
- 80% Identity
- -