Basic Information

Insect: Parnassius apollo
Gene Symbol: -
Assembly: GCA_907164705.1
Location: CAJQZP010001624.1:2123057-2177350[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.063 6.3 8.1 0.2 1 20 205 224 205 226 0.94

2 9 0.9 91 4.4 3.3 1 23 299 321 299 321 0.97

3 9 0.00015 0.015 16.4 0.8 1 23 325 347 325 347 0.98

4 9 0.021 2.1 9.6 0.9 1 23 352 375 352 375 0.92

5 9 0.014 1.4 10.1 0.4 2 23 383 405 382 405 0.93

6 9 0.00053 0.054 14.6 6.0 1 23 412 434 412 435 0.95

7 9 0.00053 0.053 14.6 0.9 1 23 441 463 441 463 0.96

8 9 9.2e-08 9.4e-06 26.4 2.5 2 23 470 491 469 491 0.96

9 9 2.3e-05 0.0024 18.9 3.3 2 23 498 519 497 519 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.063	6.3	8.1	0.2	1	20	205	224	205	226	0.94
2	9	0.9	91	4.4	3.3	1	23	299	321	299	321	0.97
3	9	0.00015	0.015	16.4	0.8	1	23	325	347	325	347	0.98
4	9	0.021	2.1	9.6	0.9	1	23	352	375	352	375	0.92
5	9	0.014	1.4	10.1	0.4	2	23	383	405	382	405	0.93
6	9	0.00053	0.054	14.6	6.0	1	23	412	434	412	435	0.95
7	9	0.00053	0.053	14.6	0.9	1	23	441	463	441	463	0.96
8	9	9.2e-08	9.4e-06	26.4	2.5	2	23	470	491	469	491	0.96
9	9	2.3e-05	0.0024	18.9	3.3	2	23	498	519	497	519	0.97

Sequence Information

Coding Sequence: ATGTGCCGGTGTTGTGCGTCTGAAGGTCTGTTTAAGGACGTGAATACCACGTATCATTGGATGGGAGAGGATGAGGTCTATGCAGATATGTTACACTTTTGTTTTGATATAACCCTCGCTTCTGCTGAGGGCCAGAACAATGGCGGTATATGCGAAGTGTGCATTACGCAGCTACGCAACGCTGCCAATTTCAAGAAGCAAGTGCAGCATACCGAAGAACAATTCAAAAAAAGACTGGCGGAAGTAAATAGTTTTAAACCTGAAGTAATAAAGGTGGAAATGTCAGCAGAGGATGGAGCCGAATTTGACAACAATTTATCTGAGGACTATCAATCAGGGCCAGAGTTTGAAGTGCCAATAAAAGAAGAGAGTCCAGAGCCAAAGCCCAGGAAGAGGGCAGCAAAAGCCACTACGTCCAAAGCTAAGAAGGCGAAAACCGACTCCGGCGAGACGTCCACGAAACGAACGGACGGCGACCCCCCCAAGCGCaggaaaagaagaaagaaatcaaCGGAAAGCGCGACGCCAGAGCGCATAGAGCATAGGGTGAACTTAACCGCAATCCTCCAAAACTCCAACGCGAGCCCGTTCAGAGACAAGACTATGCGCGGATTCTCATGCCTGTACTGCGCTAAATACTTCCAGGACATCGACGAACTCCGCTCCCACACTGCCCAGCAATCCGAAAAAGATAAAATCAACTCCATGATCGATTATAAGCTCAGCTACAACCCAATCAAGCTGGACATCACGAACTTATCTTGCATCGTCTGCCACACCCAAATGAAGGATCTCAACGATTTGAAAGACCACTTGGTTAACGTCCACAATAAAACGATTTataaaaacatcaaggatataattCTACCGTTTCGTTTGGAGAACGGACAGAATTTCACGTGCGTGATCTGTTCCGTTGTACACATATCATTCAAGAACCTTTATCATCACATGAGCTCTCACTATAGAAATTATTGTTGTAAGAAATGTGGCGCGGGATTCATCACCATCGCTGCCCTGAGGAAGCACGGGAAGACCCATTACCAAGGTAACTTCCCTTGCGATTTCTGCGACAAAATATACACGTCTCTGACTAAGAAACGCAACCACGAAAAGGGGGTACATACGGGTGGGTGGTTGAGAAACAAATGTCCCCATTGCCCGGAAATTTTCGTCAGTTATTACGACAGGAGTGAGCACCTGGTCAAAGTGCACAACGAGACCCCCATAGTCTACCCGTGCAATGCGTGCAACAGAACGTATAAAAAGAAGTTCGAACTGAATCGGCATATCAAGCATCACCACCTGCAGCAGAAGAACTATCTGTGCGATAAATGCAATGCGAAGTTCTTCTCCAAGCGTGGCCTAATCGATCATATGCTGCGGCATACGGGAGCTGAGCTGTGCTCGTGCGATATCTGCGGGAGATCGTTCTCGCGTGCGAGAACATTACGGGAGCACATGCGTACCCACGACGTTGACAAAAAGCTCCAATGTGATGTTTGCAAAAAGACCTTCGTCCAAAAATGCAGCCTGAAGAGCCACGTGCGTCTCCATCAGGACGATCTGGAGATCTTCAAAGAGTTCGATGACGTCAAACATTTAATAGACAACAGAGAAATGACGTTGAAGCAAATAGCggctgaaaataaaaagaaagcaGAGGCGGAGAAGAATAAAGCGCAAATTTCGTAG
Protein Sequence: MCRCCASEGLFKDVNTTYHWMGEDEVYADMLHFCFDITLASAEGQNNGGICEVCITQLRNAANFKKQVQHTEEQFKKRLAEVNSFKPEVIKVEMSAEDGAEFDNNLSEDYQSGPEFEVPIKEESPEPKPRKRAAKATTSKAKKAKTDSGETSTKRTDGDPPKRRKRRKKSTESATPERIEHRVNLTAILQNSNASPFRDKTMRGFSCLYCAKYFQDIDELRSHTAQQSEKDKINSMIDYKLSYNPIKLDITNLSCIVCHTQMKDLNDLKDHLVNVHNKTIYKNIKDIILPFRLENGQNFTCVICSVVHISFKNLYHHMSSHYRNYCCKKCGAGFITIAALRKHGKTHYQGNFPCDFCDKIYTSLTKKRNHEKGVHTGGWLRNKCPHCPEIFVSYYDRSEHLVKVHNETPIVYPCNACNRTYKKKFELNRHIKHHHLQQKNYLCDKCNAKFFSKRGLIDHMLRHTGAELCSCDICGRSFSRARTLREHMRTHDVDKKLQCDVCKKTFVQKCSLKSHVRLHQDDLEIFKEFDDVKHLIDNREMTLKQIAAENKKKAEAEKNKAQIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00195459;
90% Identity: iTF_01155792;
80% Identity: -