Papo006471.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010000419.1:5357728-5374089[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.16 17 6.8 0.0 2 23 272 293 271 293 0.96 2 12 0.00032 0.033 15.3 4.7 1 23 299 322 299 322 0.96 3 12 0.7 71 4.8 0.5 1 23 337 359 337 359 0.79 4 12 0.00067 0.068 14.3 4.3 1 23 626 648 626 648 0.97 5 12 9.4e-05 0.0095 17.0 2.7 3 23 655 676 653 676 0.96 6 12 8.1e-06 0.00082 20.3 0.4 2 23 685 706 684 706 0.97 7 12 1.3 1.3e+02 3.9 2.0 2 23 710 731 709 731 0.95 8 12 0.086 8.8 7.6 0.8 3 23 746 767 744 767 0.95 9 12 9.1e-05 0.0093 17.0 1.9 1 23 773 795 773 795 0.98 10 12 0.057 5.8 8.2 4.0 3 23 803 823 802 823 0.97 11 12 0.033 3.4 9.0 6.2 1 23 829 852 829 852 0.95 12 12 0.0082 0.83 10.9 2.9 1 23 856 879 856 879 0.95
Sequence Information
- Coding Sequence
- ATGCTGTTTGGAGCAGATATAGCAGCTATTAAGCTATCTTTAGAAAAGGCCGATGTACTATTTGAAAATTCATTGATGTCACCGGATTCAATCGACTTTGGACAGAAATTTAATAACTTACAACCAAAAAAGATTGTTTTCGCCAACAGAGCCCAAGAAGTCAAAAACCGATGCACTAGTAGAGTGAAAATACAGAATTCCTATAATACAATAATGGAGCCAAAACTAAGAAACGCGAATGATATGAAAACGTATTTTAACTGTCGTAAGAAATCTGTACAGCAATTCAAAGATAGTAAAAGTGGTGGATTGACTACTAAGGACGCGGTGCAGTTTTTATTACAAGGAACCTTGAAGCGGAGAGTATGCcgcttttgtttgtcaataaCAACCTCCTTATCAGAGTTAGATGAGATACTTGAAGTAGCCAGTTTAGGAGCATTGTATCAAGTCACTATTAGGGATATGATCGCTAGCTTCTATCCTTTTCAGgtGGCAGATGATCCCAACTTACCCAACAAAATATGCACCAAATGCTTAGATAAAACCATCAGCTCATATTTATTTACACAGCAATGTGAACGAGCTGAACGAGCATTGCGTAATTACTTTAATGATATTGATGATAAATTTGATAAGTTAGATCCTATTGAACACGTCAAAAAACGAGGAAGACGAAAATTGAATCCCAACTACAATATACTGTACGtagattataaaaaagttatgagtTATGCAGACCCGATaattaatatagtaaatattGGCGCATCGCTAGAAGAAAAAGAGAATGTAATGGAAATAAGCGAATTAGAATGTCCAAGATGTTGGCTAGTGTTACCCAATATAGAATCATTGATTAATCATGAGAAAATCCATCCGAAATCTATGTGGTATAGTTGTAGACTTTGTGGCAAATCATTTGTCAAACATTCTCAGTACAAAAATCACAAAAAGCAGATTCATATACTTGGAAAAAAGTCTGATGTCAATATGACAAACAAAGAATTTAAATGTAATGAATGTGGACTAGTTTCAGAAGATGTTGGAAAACACTTGCAGCATATAGAAAAGCACAAATTCAAACAAGTTATAGAACATTTAATTGAAAGGAAAATGAATGATTTATGTGCAGTCTGCATGGAGAAAGGGAACAAAATGGTGGAATTGAATGAAACATTACATTTCTATGCAGGATACCCTGAATTAACTGGAGAAAAGTCTTTAGCTACTGTATTGACTGCAACTATTCCGGAGaTGAGCACTGTTCATGACAACACTGGGACAAAAATTTGCGAAACATGTCTAAATCATGCATTGGCCTCTTACATTTTTGTTAATAAGATTaaatatactagagatagattaCAGACATGTATTAGTCTAATGTTAGAGAATTTAAAAGATGTAGGCAATTCAGATAATTACCAACACATAATGGTAGAAATATCAGCAGACACTATTTTACCTTTTATGGTGAAGGAAGAACCAGATGATGTTTTTCAAAGTGAAGATTGTGATATAGATGAATCAAAATTAAAAGTAGAGGTCCTAGAGGATGAGTTTAGAATAGAATCTGAAGGTTCAGACAATGAAAGTTCAAAATTTGAAGATTTTAGCATAGCAGTGGGAAACAAGAAAACAAGTGACTATCATAAAAATACTTACTGTCCATTTAGTGCTAATACAAATTTGTTTATTGACAATCCAGCGAGAGATGcaaccaaaaaatattttaataaaaaactagtGAACGGTTATCAAACAAAGGGAACAAATGGCAATAATTTGAAAAACACCCCTGTTGATAATATCTGTAGTGAAttcttaacatttaaaaaaaaaccaaaaccaTTAAAGAGGCATATGCCTAAATTTACATGTCCTTTCTGTGGTAAACATTTCATTTCCGATTATTTCCTCAAAAAACATGTCTTTAAGCATATTAACATGACAATAAATTGCCACATATGCTCTAAACAATTTAAATCAAAGTTCTATCTATTTGAACATATCAAGATGGTTCATATTGCAAACGATAAAACCTATAGTGTGTGTGAAATATGTGGTAGAAGTTATGCGGACataagaaatttacaaaaacacaaaaaaacacataaaacaaaAGAATGTCTGCTATGTGATAAATTTTTCTTGTCGCAGAAACGTTTTGACAGTCACTTACAAAGGCACGCAGTCAAATTCAACATGCTCAAGAAACTTAAAACCCAGATTTGCAGTGTTTGTGAAAAAGAGTGTTCAAATGGAAACGAACTGTCTCTGCACGTGAATAAGTCGCATTTGCAAATAAAACCTTACAGTTGTGATATGTGCGAGAAACAATTCTACACAGAATACAATTTGAGTAGTCATAAAAAAGTGCACAGTTCATATTTAAAGGAGATTTGTGAATTCTGTAAAAAAGTGTTTAAGTGTAGGAAAGACTTTGTTATTCATCTTAGAAAGCATATAGGCGCAAAACCTCATCACTGTCAGGTTTGTGAACAATCTTTCTATTCAGACAAAGGCTTAAATAGTCATATGAGACATACTCATGGTGGTAGATTTTGTTGTCGACTTTGCAAATTggtatttaataagaaaatagaCCTTAAGACCCATGTAAATGTAACCCATAATGTTATTAGCTGTAAATAA
- Protein Sequence
- MLFGADIAAIKLSLEKADVLFENSLMSPDSIDFGQKFNNLQPKKIVFANRAQEVKNRCTSRVKIQNSYNTIMEPKLRNANDMKTYFNCRKKSVQQFKDSKSGGLTTKDAVQFLLQGTLKRRVCRFCLSITTSLSELDEILEVASLGALYQVTIRDMIASFYPFQVADDPNLPNKICTKCLDKTISSYLFTQQCERAERALRNYFNDIDDKFDKLDPIEHVKKRGRRKLNPNYNILYVDYKKVMSYADPIINIVNIGASLEEKENVMEISELECPRCWLVLPNIESLINHEKIHPKSMWYSCRLCGKSFVKHSQYKNHKKQIHILGKKSDVNMTNKEFKCNECGLVSEDVGKHLQHIEKHKFKQVIEHLIERKMNDLCAVCMEKGNKMVELNETLHFYAGYPELTGEKSLATVLTATIPEMSTVHDNTGTKICETCLNHALASYIFVNKIKYTRDRLQTCISLMLENLKDVGNSDNYQHIMVEISADTILPFMVKEEPDDVFQSEDCDIDESKLKVEVLEDEFRIESEGSDNESSKFEDFSIAVGNKKTSDYHKNTYCPFSANTNLFIDNPARDATKKYFNKKLVNGYQTKGTNGNNLKNTPVDNICSEFLTFKKKPKPLKRHMPKFTCPFCGKHFISDYFLKKHVFKHINMTINCHICSKQFKSKFYLFEHIKMVHIANDKTYSVCEICGRSYADIRNLQKHKKTHKTKECLLCDKFFLSQKRFDSHLQRHAVKFNMLKKLKTQICSVCEKECSNGNELSLHVNKSHLQIKPYSCDMCEKQFYTEYNLSSHKKVHSSYLKEICEFCKKVFKCRKDFVIHLRKHIGAKPHHCQVCEQSFYSDKGLNSHMRHTHGGRFCCRLCKLVFNKKIDLKTHVNVTHNVISCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158211;
- 90% Identity
- iTF_01157139;
- 80% Identity
- -