Papo003909.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius apollo
Gene Symbol
-
Assembly
GCA_907164705.1
Location
CAJQZP010000220.1:7102141-7103274[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0087 0.88 10.8 0.6 1 23 74 96 74 96 0.96
2 8 0.0019 0.19 12.8 2.0 1 23 122 144 122 144 0.98
3 8 1e-05 0.001 20.0 0.2 1 23 152 174 152 174 0.98
4 8 2.1e-06 0.00022 22.2 0.3 3 23 182 202 180 202 0.96
5 8 8.4e-05 0.0086 17.1 3.6 1 23 208 230 208 230 0.99
6 8 0.00045 0.046 14.8 2.6 1 23 236 258 236 258 0.99
7 8 0.019 1.9 9.7 1.3 2 23 268 289 267 289 0.95
8 8 3.1e-06 0.00032 21.6 3.2 1 23 301 324 301 324 0.97

Sequence Information

Coding Sequence
ATGTCAACAATGCCGTCACTTCTGCAAATGGAGACCAAGTCCGGCGTCGGCATTCAAGATCATTGGATGAAGAGTGTTATGGAGCCGGCCGGTAGTGAAAAACAGATGCAAAACGACAATAGATCATCTGTGAAGCGTGAAATAATGGCTGAGCAATACAATGGTGGTGGTGACAATAACGTAACTTATGAGATGAAACAGCAGCCGAATGAAACAAGGTATAGATGTGATGTGTGCGATTTAACATTCGAGGGTATGGAGTTTTTGATGCTCCACAAGAAATTTCACGGTAATGACAAAGATATTCCACAAATGGAACCCGAAGCTCCACCAGTAAAagaaggaccgaagaagcggcgtAAATTTAAGTGTGATCTATGCGATGTTAAAGTGAACTCACAGTACCACCTTGATATACACCGCAGTAAACATGAAGGTATTACatcgaaaaaatatatttgtgaaGTTTGTGACCGTAGTTTCGTCGCAGCCCAGTTCCTAAAAAGCCACATGCAAACTCATTCTGCAACTAGTACTATTAACTGTGAGATTTGTAACAAAAGTTTTACAGGTCAAGCGTATTTAAAACTTCACATGCAACTGCATAAtgacataaaaaaattcaaatgttcAAAGTGTGATGAAATGTTGCCAACgaaaaactgtttaaaaattcACATGAAGAAGCATACAAAAGTGAAAAATTTCAAGTGTGATTTCTGTTCAAAATTGTTTGTATCTAAAATCACAATGGAGAAACATAGACAGACACATGAGGGTCAGCCTGTAGACTGTCTTGTGAAATGTACACAATGTGATAGAACAATGCATTCGTCATTACTGAGAACACATATTGCTAGAGCGCATCCTcctaatgttgatgatgatgtgaAAAGACCCCACAAATGTTCAACGTGCGGTAAAAGCTTCATTGTTAAGATAAACTTGAATCTCCACATCAGGGTTTGTCATCCTGACCTTGCTGAGCCTGAGGATGAAGATGAGGATGTCATGACAGACAATTCTTAG
Protein Sequence
MSTMPSLLQMETKSGVGIQDHWMKSVMEPAGSEKQMQNDNRSSVKREIMAEQYNGGGDNNVTYEMKQQPNETRYRCDVCDLTFEGMEFLMLHKKFHGNDKDIPQMEPEAPPVKEGPKKRRKFKCDLCDVKVNSQYHLDIHRSKHEGITSKKYICEVCDRSFVAAQFLKSHMQTHSATSTINCEICNKSFTGQAYLKLHMQLHNDIKKFKCSKCDEMLPTKNCLKIHMKKHTKVKNFKCDFCSKLFVSKITMEKHRQTHEGQPVDCLVKCTQCDRTMHSSLLRTHIARAHPPNVDDDVKRPHKCSTCGKSFIVKINLNLHIRVCHPDLAEPEDEDEDVMTDNS