Papo018519.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001176.1:432946-478344[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 1.5 10.1 0.6 1 23 246 269 246 269 0.94 2 12 1.1 1.1e+02 4.2 0.1 2 23 278 299 277 299 0.94 3 12 5.6 5.7e+02 1.9 2.7 1 23 303 326 303 326 0.91 4 12 0.00047 0.048 14.8 3.8 1 23 329 352 329 352 0.94 5 12 0.0037 0.38 12.0 1.0 2 21 357 376 357 377 0.92 6 12 0.00013 0.013 16.5 0.8 2 23 390 411 389 411 0.94 7 12 0.00011 0.011 16.8 0.3 1 23 416 438 416 438 0.98 8 12 1.2e-05 0.0012 19.8 3.5 1 21 447 467 447 472 0.95 9 12 0.00047 0.047 14.8 2.2 1 23 480 503 480 503 0.92 10 12 0.00051 0.052 14.6 0.2 1 23 509 532 509 532 0.96 11 12 0.004 0.41 11.8 0.4 3 19 546 562 544 563 0.91 12 12 0.0033 0.34 12.1 1.1 1 23 576 599 576 599 0.98
Sequence Information
- Coding Sequence
- atggagtgtagagAAAGATGTTTTATCGAGAAGAagttaaagaattttttaaaaatatgggcAAATATAGATgttCCAGATGGTCTGTCGATTCAAGTGTGCTGGGAATGCCTTGCTGCAGTCAGATCTGCTGTGCGTTTCCGTGCCCAAATTCTGTCTGCATTTGATGTACTCATAGAATATTCTCGAAAAcACACTTTTCTTAACTCACCAAGTGATCTGTCTATTCATGCTATGAGCCGTCTGTCTACTACAACACTTTCTTCGGATCCCATATTGGCTCCATTAAAGGAAGAGGAACAGCCTGCTTTGGACATAGATGTTGTCAAGATTGAAGCTGATGATCCTAAATGTGATGATGGAAAGCTAGATATTTGTGAACCTGAACCTGAATTGGACGCACCACTGTCCCCTAAATTAGAGGAGGCAACAGATGTCTTTATTGATGATAGTGAATTTTTTGAAGCGATTCCATCGCCAGATCAGGAAGCTTCTGACGATGATGTCCTACTGTCAAacttgaagaaaaagaagaaaagaggCAGGAAGACCAAGAAGGAGAagagtaaaagaaagaaaaaggatGATGTGGAGCAAAAAGAAGAACAGCCACTGAAGCATTCGAGAAAATTGAAGAACTTGCCAGATTTTGTGGAGCTGTACACAATGACTGAAGAGGAGATGTGGAGGATAAGAGCAGAGGATGTGACCCGGAAGGAGTTCGTCGAACTTAAATATAAGTGTGAAGATTGTGTTATTGCCTTCAATACAGAGAAACTAATGAATTATCATAAGAATGGAAAACATCGACCGAAAATGGAGGGCAACGTGCAGTGCGACGTGTGCAAAGCGTACTTCCTGACGCGCGACAACGTGGCGGTGCACCGCGCGCTGCACCTGGCCGCGTACCGCTGCCGCGCGTGCGGCGTGTGCACCACGCTCAAGCGCACCGTGCTGCGGCACGCGTGCGCTCTGCACCTCACCCATGCCTGTCCCACCTGTGGGCAGCAGTTCACCACGAAATCTAAATTAGTATACCACCGAAGCGTGTGCCATCAGGAGCGACCACAGTGCGATTGCTGCGGGAAGGTGTTCGCCAACAAAATGACCCTCAAATATCATTTAAAAATACTCCCTCAGAGTAAACCCAAAGAGAAACTCCATTTACCTTGCAAAGGCTGCGACAAAGTGTTTCACTCTAAGAAGAGTTATAGAGCCCATGTGGTGATTCACAACGGGTTGAAGTATCCGTGCCCGATTTGCGGGAAACTATTCATGTGGAAACGCAACCTCGCCCGACACACTCGCAACCATCGTGAAAAGGACGAGGGAGCTCTCTACGAATGTAGGGACTGCGGTAAGAGTTTCGCGAGTCGCGACTGCTACAAGAACCACATGCGGCTCAGCAAGCGACATGTGCCCGAGGACGCGTATATCCACACGTGCAGTTATTGCGGGAAGAAGTTCGCCACGAAATGGTGTATGGTGGACCATATAGACTGGGACCACCTGAAGCTAATCAAGTACCAGTGCAATGTTTGTTTTAAGCCCTTTAAAACGGCAAAAATCTTGGTGGCGCATATAAACAATATCCACCAGGGAAAGAAGAATAAGGAACCTGAGGAGGAGCACCTCTGCGAAATATGCGGGAAGTCGTACAAGTCGGCGAAAAGATTAAAGGGCCACGTGTGGGCGATGCACACCAATCGGTCCGCGTCCAAGAGCTACAAGTGCAAGCTGTGCCCTGCCACATTCACGTGGCAGACCTCGATCTACAAGCATATGAAGATGATGCACGACAACAACAAGCGGACTAAGCAGCCCAGACCAATACCATCGGTAAAGAAGCAAGAGCCCTACCCGGAGATCGAACTGGCGAACAGAATGCAGTACTTCCAGCAGAATCTCGCGAACAACTTAGTTCAAAACATGGTGCAAGCTCAACCGGTCCCTATTAGTATTGtacaaaatattgtttaa
- Protein Sequence
- MECRERCFIEKKLKNFLKIWANIDVPDGLSIQVCWECLAAVRSAVRFRAQILSAFDVLIEYSRKHTFLNSPSDLSIHAMSRLSTTTLSSDPILAPLKEEEQPALDIDVVKIEADDPKCDDGKLDICEPEPELDAPLSPKLEEATDVFIDDSEFFEAIPSPDQEASDDDVLLSNLKKKKKRGRKTKKEKSKRKKKDDVEQKEEQPLKHSRKLKNLPDFVELYTMTEEEMWRIRAEDVTRKEFVELKYKCEDCVIAFNTEKLMNYHKNGKHRPKMEGNVQCDVCKAYFLTRDNVAVHRALHLAAYRCRACGVCTTLKRTVLRHACALHLTHACPTCGQQFTTKSKLVYHRSVCHQERPQCDCCGKVFANKMTLKYHLKILPQSKPKEKLHLPCKGCDKVFHSKKSYRAHVVIHNGLKYPCPICGKLFMWKRNLARHTRNHREKDEGALYECRDCGKSFASRDCYKNHMRLSKRHVPEDAYIHTCSYCGKKFATKWCMVDHIDWDHLKLIKYQCNVCFKPFKTAKILVAHINNIHQGKKNKEPEEEHLCEICGKSYKSAKRLKGHVWAMHTNRSASKSYKCKLCPATFTWQTSIYKHMKMMHDNNKRTKQPRPIPSVKKQEPYPEIELANRMQYFQQNLANNLVQNMVQAQPVPISIVQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -