Basic Information

Insect: Parnassius apollo
Gene Symbol: -
Assembly: GCA_907164705.1
Location: CAJQZP010001624.1:354311-380165[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.1 10 7.4 0.3 1 23 251 273 251 273 0.96

2 10 0.033 3.4 8.9 0.1 2 21 301 320 300 321 0.93

3 10 0.00015 0.015 16.4 0.5 3 23 344 364 342 364 0.96

4 10 1.3e-07 1.4e-05 25.9 0.6 1 23 368 390 368 390 0.99

5 10 0.036 3.7 8.8 0.4 1 23 395 418 395 418 0.94

6 10 0.14 15 6.9 0.7 1 23 424 447 424 447 0.92

7 10 0.00019 0.019 16.0 1.3 1 23 454 477 454 477 0.98

8 10 2.3e-05 0.0023 18.9 2.3 1 23 483 505 483 505 0.98

9 10 4e-05 0.0041 18.1 5.8 1 23 511 533 511 533 0.98

10 10 2.8e-06 0.00028 21.8 1.0 1 23 539 561 539 561 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.1	10	7.4	0.3	1	23	251	273	251	273	0.96
2	10	0.033	3.4	8.9	0.1	2	21	301	320	300	321	0.93
3	10	0.00015	0.015	16.4	0.5	3	23	344	364	342	364	0.96
4	10	1.3e-07	1.4e-05	25.9	0.6	1	23	368	390	368	390	0.99
5	10	0.036	3.7	8.8	0.4	1	23	395	418	395	418	0.94
6	10	0.14	15	6.9	0.7	1	23	424	447	424	447	0.92
7	10	0.00019	0.019	16.0	1.3	1	23	454	477	454	477	0.98
8	10	2.3e-05	0.0023	18.9	2.3	1	23	483	505	483	505	0.98
9	10	4e-05	0.0041	18.1	5.8	1	23	511	533	511	533	0.98
10	10	2.8e-06	0.00028	21.8	1.0	1	23	539	561	539	561	0.98

Sequence Information

Coding Sequence: ATGGAGGTTGATAACGATAATACGGATATAACGGTTGAAACACTGCCATTGCTAGGAGTTTGCAACCTATGTTTGCACGATGGGGTTGTAAAAAGTATGCTAATAAAGTATGAACACGATGGAAATGCAGAAACTTATGTAGAAATGATATTGAAATGTTTCTCTTTAGATGTGCTTACAGTGGACTTGGAGGACACAAAACGTCTTATATGCAATATCTGTATTGACAAATTAAGAGATACAATCCACTTCAGGGAGATGGTGGAGACATCTTTAAAGACTTTGGAAGCAACTTTTAAACTGCAACAACAAAATCGGCTGTCACCTGGGAATGTGAAGAAAGAGTTGGCAATTGAGGATCTGATACGAGACGGTTGCGATTTCGACACTGGCGATGATCTTATAGAACAAAGTGAGCTGTCAGCCAAGAATGTGAAGAAAGAATTGGAAGATCTCATACGGAACAGCTGCGATGTCGATTCTGACGATGATCATATAGGTGCAATAGAAGGCGCAGTGTATGGGGTCAAGCAGGAGTATCTGGATGCTGAACAGGATGTCACAGATCCCACGAATATGATCCTGAAGGAAGAGGATTTAGAGGCGTACCACCCAAAGAGAACAAGAAGAAAAGCCTTAACAAACAAAAAGAAAGTCTCTTACTCCATAAAGAAGAACACAGATACTTCGGAAATAGAGAAGATGCTGAAAGCTGGCCTGTTCCCATTCAAAATATTGAAAGACAGAACGTATTCCTGTGTTATATGTTCTATGAAATCGACTAACCTTGACGATATAAAATCACACGTATCAAATCACAGTTTATCCAATTTGCACATAGCCTTTAAAAAGATCAGCGCCTCCAAACTACAACGGTTTTGTAAGGCCTCGAATAAGTTAAGGTGTAAACTGTGCAAGACGGACCTCTCGGACTATGAAGAGTTGAGGCAGCACATAGAGAGTTGCGCACGCCTAAATTCCAGCAGGTGGAACAAGCTGCCCTTCAAGCTGGAGAAAGACCAACTGGACTGTCCGATTTGCAAAAAGAAATTTCTAAACTTCGTCAATTTAAACACCCATATGAACATCCATTATCCAAATTACACTTGCGAGAACTGTGGGAAGAGTTTCGCTTCCCAAGCGAGACTGAGAGGTCACATGAGGACTCACGAGTTGGGTGACTTCCCCTGTCGATATTGTGACGCCGTATTCGATAAAGCCACGAAGAGAGAGAACCACGTCTCGAAAGAGCACAAATCAGGCTTCCGGTATGCCTgtaagagatgcaacatatctctGTCCTCCTTCTACACCCGTCAGAAACATTTAGCAGAGGTGCACAACGAAGAACTAAAGAGATACAAATGCAAAGCCTGCACACAGAGTTACATAACACCGGGTCATTTGTCGAGCCATGTCCGTAGAGATCATTTGAACGAGCGGAACCATAAGTGCGATAAATGTGACCTTGCATTCTACACTAAGAACGCTCTGAAGATGCACATGATAAAGCATGATGGGGAGAGGATACACACGTGTCACATCTGCCAGAAGTCATATCAGAGATTAAAAACGTTGAAAGAGCATATGCGCATACATAATAATGACAAACGGTTCATCTGTCCTGTTTGTGGGAGGGCGTTTACTCAAAAATGCACTTTAAAGGGTCATCTTAAGGTCCACGAGAGGAAGATTGATTTGGATGATAGAATAGTGCAGCCGGTGATCGAAACTCCCGCACCTTGTTCTGAACGTCCCCTTAATTCCGTTGTTATATGTCGATTAGTTCCATCAACACCTGGAGACTAA
Protein Sequence: MEVDNDNTDITVETLPLLGVCNLCLHDGVVKSMLIKYEHDGNAETYVEMILKCFSLDVLTVDLEDTKRLICNICIDKLRDTIHFREMVETSLKTLEATFKLQQQNRLSPGNVKKELAIEDLIRDGCDFDTGDDLIEQSELSAKNVKKELEDLIRNSCDVDSDDDHIGAIEGAVYGVKQEYLDAEQDVTDPTNMILKEEDLEAYHPKRTRRKALTNKKKVSYSIKKNTDTSEIEKMLKAGLFPFKILKDRTYSCVICSMKSTNLDDIKSHVSNHSLSNLHIAFKKISASKLQRFCKASNKLRCKLCKTDLSDYEELRQHIESCARLNSSRWNKLPFKLEKDQLDCPICKKKFLNFVNLNTHMNIHYPNYTCENCGKSFASQARLRGHMRTHELGDFPCRYCDAVFDKATKRENHVSKEHKSGFRYACKRCNISLSSFYTRQKHLAEVHNEELKRYKCKACTQSYITPGHLSSHVRRDHLNERNHKCDKCDLAFYTKNALKMHMIKHDGERIHTCHICQKSYQRLKTLKEHMRIHNNDKRFICPVCGRAFTQKCTLKGHLKVHERKIDLDDRIVQPVIETPAPCSERPLNSVVICRLVPSTPGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01155711;
90% Identity: -
80% Identity: -