Papo006493.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010000419.1:6165650-6169049[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.6e-06 0.00046 21.1 0.1 3 23 180 200 178 200 0.96 2 10 7.2e-05 0.0073 17.3 0.1 3 23 207 228 206 228 0.94 3 10 2.2e-05 0.0022 19.0 1.8 2 23 234 256 233 256 0.97 4 10 0.00051 0.051 14.7 3.1 2 23 260 281 260 281 0.98 5 10 0.015 1.6 10.0 4.3 1 21 284 304 284 305 0.90 6 10 2.9e-05 0.003 18.6 0.9 1 23 316 339 316 339 0.97 7 10 0.0031 0.32 12.2 0.6 2 23 346 367 345 367 0.96 8 10 0.00028 0.028 15.5 0.3 1 23 373 395 373 395 0.97 9 10 0.13 14 7.0 0.5 1 23 401 424 401 424 0.94 10 10 0.00031 0.031 15.4 3.7 2 23 430 451 429 451 0.97
Sequence Information
- Coding Sequence
- ATGTCTCACCTCTCCGGTAGGAGCAATAGTGTTCTGCTGTTCTGTGTCTCACCTTCATTACCTTCATGCACAGAGTACCTTggtataggGTTATGTTTGGCAGTAACAGAAAAACGAGAGATATCACTTGAAGACAGCGTCAGAGTTCAGCGACCATATTTTGATGAAACTGTTACTTTCGTTGCAATGTTCCGTGATCTTGGTATATCAATTGAACCACTGTTACCTCAAGTACTGTGTATTTCTTGTGCAACAAACACTATAAATTGCTATCTGTTTCAAAAGCTTAGTATTTTTTCAAACAACAAATGGAATGTAGtgctagataaaataaaaaaaagcctTGAACATTCAAGTACTATTGGCACCAATATTCATAGTGTATATCTTATGATAAACAAGACAGATAATATTATGTTCACTAGTAAAAAGAGTTATTCttgtaaaagtaaaagaattgctttaatcaaaatcaaggaaattatgaaaggtaGACAAAAGTATATTAAAGTGAAAAAAGCTGTTACAAACTCAATTTGTGAAGAATGTGGTGAACAATTTAACTCAAATGCACTTCTAATAAGACATATGAAACTTCACACAAAATTTAGCAACCCATGTACGAAATGTCCAAAAACATTTTCAACTCCTCTTCAATTAGAAGAACATGCAGAGCGTGTTCATTATCCAAAACAGTTGCAGTGTACAAAATGTGCAAAACGGTTTAGTACAGAGAGAATGCTGAAAATTCATCAAAGAATGTACCACATTGCTGCAAAATGTAAGCAGTGTTCTATAGAATTTCCATCAAAAAAAGCTTTACACTCTCATATGAACAAGCATGCTATTCACAGATGTTCACGATGTAATAAGAGCTTTGTAAACAAATACACTTTTAGATTTCATCTTAAATCATGTGGCAATGCAGAAGAGAAAAAACTAAGTTTCTTCTGTGATATATGCAGTAAGGGTTATGTACGTAAAAATGGATTACGAACTCATTTAAAAACAGACCATGGGTTTGGTGAATTAATATCTTGTAAATGGTGTAATAAGAAATTTGATGCTGTGAGTAGGTTAAAGAATCATATTGTTAAACATACACGAGAAAGAAATTTTCATTGTGGTCAGTGTGGAGGCAAATTTGTCACACAAGCAGCATTAGTGTATCATATAAGGCTTCACACTGGCGAGCGACCATTTCCATGTGACATGTGTGATGCGAGTTTCCTATCAGCGTCTAGAAGGATGGAACATAGAAGGCGGAAGCATTTTGAACCAACACAAGAGTGTCATATATGTCATGTCAAATTTGTAACTGGTAATCAATTAAGAAAACACATTCAAAGGCATTCTAATCCACACAGCAAGCTGTTTGTGCCTAACAATGTAGgtgaaataaattacttttccttACTTGCAAATGAacagtaa
- Protein Sequence
- MSHLSGRSNSVLLFCVSPSLPSCTEYLGIGLCLAVTEKREISLEDSVRVQRPYFDETVTFVAMFRDLGISIEPLLPQVLCISCATNTINCYLFQKLSIFSNNKWNVVLDKIKKSLEHSSTIGTNIHSVYLMINKTDNIMFTSKKSYSCKSKRIALIKIKEIMKGRQKYIKVKKAVTNSICEECGEQFNSNALLIRHMKLHTKFSNPCTKCPKTFSTPLQLEEHAERVHYPKQLQCTKCAKRFSTERMLKIHQRMYHIAAKCKQCSIEFPSKKALHSHMNKHAIHRCSRCNKSFVNKYTFRFHLKSCGNAEEKKLSFFCDICSKGYVRKNGLRTHLKTDHGFGELISCKWCNKKFDAVSRLKNHIVKHTRERNFHCGQCGGKFVTQAALVYHIRLHTGERPFPCDMCDASFLSASRRMEHRRRKHFEPTQECHICHVKFVTGNQLRKHIQRHSNPHSKLFVPNNVGEINYFSLLANEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157113;
- 90% Identity
- iTF_01159924;
- 80% Identity
- -