Basic Information

Insect: Parnassius apollo
Gene Symbol: -
Assembly: GCA_907164705.1
Location: CAJQZP010001624.1:1675075-1681586[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.5 51 5.3 0.3 2 23 19 41 18 41 0.91

2 15 3.6e-07 3.6e-05 24.6 0.4 1 23 139 162 139 162 0.95

3 15 0.15 15 6.9 0.6 3 20 168 185 167 187 0.89

4 15 0.041 4.2 8.7 0.2 2 22 195 215 194 217 0.86

5 15 0.022 2.3 9.5 0.1 1 14 224 237 224 238 0.83

6 15 0.004 0.41 11.8 0.7 2 23 268 290 267 290 0.95

7 15 0.031 3.2 9.0 0.2 2 23 315 337 314 337 0.93

8 15 4.7 4.8e+02 2.2 0.9 14 23 372 381 361 381 0.78

9 15 0.0003 0.03 15.4 1.2 1 23 385 408 385 408 0.95

10 15 0.035 3.5 8.9 0.6 3 20 415 432 414 434 0.92

11 15 0.0052 0.52 11.5 0.7 3 23 443 464 441 464 0.91

12 15 0.0038 0.39 11.9 0.9 1 23 471 494 471 494 0.95

13 15 0.002 0.2 12.8 1.6 1 23 499 521 499 521 0.95

14 15 1.6e-05 0.0016 19.4 0.1 1 20 527 546 527 549 0.94

15 15 0.00025 0.026 15.6 1.3 3 23 557 578 555 578 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.5	51	5.3	0.3	2	23	19	41	18	41	0.91
2	15	3.6e-07	3.6e-05	24.6	0.4	1	23	139	162	139	162	0.95
3	15	0.15	15	6.9	0.6	3	20	168	185	167	187	0.89
4	15	0.041	4.2	8.7	0.2	2	22	195	215	194	217	0.86
5	15	0.022	2.3	9.5	0.1	1	14	224	237	224	238	0.83
6	15	0.004	0.41	11.8	0.7	2	23	268	290	267	290	0.95
7	15	0.031	3.2	9.0	0.2	2	23	315	337	314	337	0.93
8	15	4.7	4.8e+02	2.2	0.9	14	23	372	381	361	381	0.78
9	15	0.0003	0.03	15.4	1.2	1	23	385	408	385	408	0.95
10	15	0.035	3.5	8.9	0.6	3	20	415	432	414	434	0.92
11	15	0.0052	0.52	11.5	0.7	3	23	443	464	441	464	0.91
12	15	0.0038	0.39	11.9	0.9	1	23	471	494	471	494	0.95
13	15	0.002	0.2	12.8	1.6	1	23	499	521	499	521	0.95
14	15	1.6e-05	0.0016	19.4	0.1	1	20	527	546	527	549	0.94
15	15	0.00025	0.026	15.6	1.3	3	23	557	578	555	578	0.97

Sequence Information

Coding Sequence: ATGTTAACCATTTTGTACAAGTTGAAAATTGACTGTCATACCGGCGATTCCATGGTATGCGTCTACTGCTGCGAAAGCTATGACGACCCTGAGGAGTACCGAACACACCAAGACGAAGAGCATATCAGTTTCCACGTGGACACGGCATTTGCCCACGTCTTTACCAATTACAATGAGTACCTTAAAGTCGATTGCATAGACCTCGCCTGTCGTTTATGTTTAGAACGTTTCGATACGCTCAACGCTATCGCCGAGCATCTGGTTGAGTCGCACAGTATTAAGATCAACCTGGCCGTTGAGATCGGCATGCAGATGTTCAAACTGGGCGCAGAGAGATGGGTCTGCGCAATTTGTGGCATGAAGTTGCCCTGTTTGCGGATGCTCAGTCGCCACACCAGCTGCCACTACCACAAGTTTACGTGCGAAACTTGTGGGAAGTCGTATGTTAACCGAGAGAATCTGACGCGGCATATTGCGTACGGTCACAgcgaatttaaaatatgtacccgTTGTAAGAAAAGTTTTCCTAGTTGCGAGGCGAGGCGGGAGCATGTGCTAGCTTCGAAATCGTGTTGGCCTTTAAGCTGCTCTTTATGCGGTCAAAGGTTTGCTAATAGGAGGTCTAAACTCGACCATCTCGTAGAAGTTCACGCCAAACCGCCCAAGACCTACTCTTGCCCAGAGTGTGGGGAAGCATTCGACAAATGGCACCTCGATCCATATCTCATCGCGAGACGAAACGCCGAGATAGTGGTGAAATTTGCCACAGCGTACCCGTTCAGGCTCCCGGAAGATGCCTTGGTATGCGTGTACTGCTGCGAGAGTTACGATGATCCATCGCAGTATAGGAAGCACATGGACACCGAACACCAAACGTTTAAGCTGCGGATGGCTTTCATCCATTGCACCGAAGGGTACATCAAAGTTGACTGCACCGACCTACGCTGTCGCATCTGTTCTCAAAAATTCGAAACAATCGACGACGTCGCGAATCATTTAAAGGATGTGCATCAAGCGGACATAGATCCAAATTATGAGATAGGTGTTCAACCGTTCAAATTGGAGAAGGACCGTCTTCTTTGCGCCATATGTCGCTTGAAGTCCCCTTGCATCCGTCAGCTTAGCAGGCATATTCAAACTCATTTCTTGAAATACACGTGCGAGGCGTGCGGAAAATCTTACGCGACTATAACTACATTAAGACACCACATCACATACTCACACACCGGGGAGGAAAGGATTTGTAGGAAATGCAAAAGGACGTTCAGTAACCTCGAAACGAAGAGGCAACATTTGGCGGAATCGCGAAAGTGTTGGCCTCACCTGTGTAATATTTGCGGGGAAAGATTTATGACTTGGACTTTGAAGCAGGCCCATTTAACTCAAGTCCACGGAACTCCAAAGAGATCGCACGTCTGTCCAGAATGTGGGGAGGTGTTTTTAGATAGAAAAAAGTATAGGGTCCATTTCAAAATCTCCCATACAGACGACAACTATGTATGCTCTTGTTGCGGTATGAAATTTGATACGAAACGAAACTTAGAGGAGCATAGAGTTGTGCACACTAAAGAGAAACTCTTCCCATGTCCCGCGTGCCCGAAATCGTTCCCCAGGAAAAAGAACTTAGTACAGCACATGTGGATTCACAGCGAACAGAAAAGATTCGGATGTGATCTATGCAATAAACAGTTCAATCAAAGAGTTAGTTGGAAAACGCATATGAAGTCATACCATCCTGACCTTGTTAATTTTGAAGcgacaaaaaataataacgtcAAAATTGTTCTTAGCGTTCTAAAACAAGACCAATAA
Protein Sequence: MLTILYKLKIDCHTGDSMVCVYCCESYDDPEEYRTHQDEEHISFHVDTAFAHVFTNYNEYLKVDCIDLACRLCLERFDTLNAIAEHLVESHSIKINLAVEIGMQMFKLGAERWVCAICGMKLPCLRMLSRHTSCHYHKFTCETCGKSYVNRENLTRHIAYGHSEFKICTRCKKSFPSCEARREHVLASKSCWPLSCSLCGQRFANRRSKLDHLVEVHAKPPKTYSCPECGEAFDKWHLDPYLIARRNAEIVVKFATAYPFRLPEDALVCVYCCESYDDPSQYRKHMDTEHQTFKLRMAFIHCTEGYIKVDCTDLRCRICSQKFETIDDVANHLKDVHQADIDPNYEIGVQPFKLEKDRLLCAICRLKSPCIRQLSRHIQTHFLKYTCEACGKSYATITTLRHHITYSHTGEERICRKCKRTFSNLETKRQHLAESRKCWPHLCNICGERFMTWTLKQAHLTQVHGTPKRSHVCPECGEVFLDRKKYRVHFKISHTDDNYVCSCCGMKFDTKRNLEEHRVVHTKEKLFPCPACPKSFPRKKNLVQHMWIHSEQKRFGCDLCNKQFNQRVSWKTHMKSYHPDLVNFEATKNNNVKIVLSVLKQDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -