Papo017706.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- salm
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001146.1:7021311-7048881[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.3 31 5.9 1.9 1 21 44 64 44 65 0.94 2 11 4.7e-06 0.00048 21.1 0.9 1 23 365 387 365 387 0.98 3 11 9.3e-06 0.00094 20.1 2.1 1 23 393 415 393 415 0.98 4 11 1.2 1.2e+02 4.0 3.0 5 23 713 731 710 731 0.92 5 11 1.8e-07 1.8e-05 25.5 0.7 1 23 737 759 737 759 0.97 6 11 0.0023 0.23 12.6 6.6 1 23 769 791 769 791 0.98 7 11 0.002 0.2 12.8 1.9 2 23 970 991 969 991 0.97 8 11 0.028 2.8 9.2 1.6 1 14 997 1010 997 1011 0.94 9 11 0.73 75 4.7 0.0 10 23 1038 1051 1036 1051 0.93 10 11 4.2e-06 0.00043 21.2 1.7 3 23 1136 1156 1134 1156 0.96 11 11 5e-07 5.1e-05 24.1 0.5 1 23 1162 1184 1162 1184 0.98
Sequence Information
- Coding Sequence
- ATgcagacattttttttattcatctacACTACATCGGGACCGCTCATTCCAGGTGACAGTTCCGGCTCATGCTCAGAAGAAGAAATAAACAATGTCTTACCAGAAGATCCGAGAGATCGGCCAGTTGCACACATGTGCCCACGTTGTCAAGAACAATTCGAAAATCTACATGATTTCTTGTACCACAAAAGACTTTGTGATGAGAAGGCAATCCAAATGGGCGAAGAGAGAATGCACTCTGATCCAGAGGAAATGGTTGTTTCGGGGGACGAAGAGATGGATGGGCCGAACAAACGTTTAGAACAAGTACGAAGGCATCGACAAGATGCTGAAAACAATAACAGTCTTGAAGATGGCGAGGCGGAAGTACCTGAAGCTGACGTACCGCCGGTGGGACTCCCCTTCCCAGTAGCCGGTCACGTAACGCTGGAAGCCTTACAAAACACAAAAGTGGCTGTAGCTCAGTTTGCCGCAACGGCAATGGCAAACAACGCAGATAATGAAGCGGCTTTACATGAGCTCGCTGTTTTACAAAGCACATTGTTCACACTGCAACATCAGCAAGTGTTTCAACTGCAGTTAATTCGTCAACTACAAAATCAACTGTCACTAACGCGACGGAAAGATGAACAGCGCCTAAGCCCTCCGCCCAATGAACCAGAGCCAGTAGTGCCTGCGCCTCCGGCTCCATCGCCGTCACCGCCTCGTCCGCCACGGGAGCCATCTCCTCCTATACCTACTCCTCCTACAAGCCAAAACTTGCCGTCGACCCATTCGCATCTTACGCCTAAAACTGAACCAATTACCATTCCTAAAATTCCGACCTCGTCACCACCTATGATGACTCACCCACCCTATAGCTCCATATCGTCATCGTTAGCATCTTCCATAATCACAAATAATGATCCACCGCCGTCCTTGAATGAGCCCAACACTCTCGAAATGCTTCAAAAACGAGCACAAGAAGTACTTGATAACGCTTCGCAAGGTTTGCTAGCTAACAACCTTGCTGATGAGCTTGCTTTTCGTAAATCCGGAAAAATGTCACCGTATGATGGAAAATCTGGAGGGCGAAACGAACCTTTCTTCAAGCATCGCTGCCGATACTGCGGGAAAGTTTTCGGCAGTGACTCAGCACTACAAATCCACATTCGTTCACACACAGGTGAAAGACCTTTTAAGTGTAATGTGTGTGGTTCTCGATTTACCACTAAAGGAAATTTAAAAGTACATTTCCAAAGACATACTGCAAAATTTCCACATGTCAAAATGAATCCAAATCCGATACCAGAACATTTGGATAAATATCATCCTCCTCTATTAGCACAACTGTCGCCGGGGCCGATTCCTGGAATGCCACCCCATCCACTTCAATTCCCTCCGGGTGCTCCAGCACCATTTCCGCCAAGCTTGCCGTTATATAGACCACCACATCATGATTTACTGCCCCCACGCCCACTGGGTGATAAGCCTCTTCCGCCTCACCCACTTTTTGCAATGAGAGAAGAACAGGACGCACCGGCTGATCTCAGCAAACCTTCAGTACCAAGTCCACCTCGTGCACCTGAAATGTTTAAATCTGAACCTCAAGATGACGAATGTCAACGGGAATCTAGTTTTGAGGATAATGACCGTGTATCACCAAAGCGAGAACTTGAAGAAAATGACGCTGGTCAAGATGCAGAACAAGATCGGTATCCCTCAACGTCTCCATACGATGATTGCAGCATGGACTCGAAATACAGCAACGAAGATCAAATTGGCAGAGAGAGTCCACACGTGAAGCCTGATCCAGATCAACCGGAAAATCTTTCAAGTAAGAATTCACCGATATCTGGACCAATTTCAATAGCAACGGGACTTCGTACTTTTCCTTCATATCCCTTGTTTCCGCACTCTCCTCCTAGCAGTATTTCCTCTGGTAGCCTTACACCTTTTCACAATATTCCTCACGGTGTTGTTGAGCCTGATTTAGCTCGTGATCCCGTTTTTTATAATTCAATACTGCCGCGGCCTGGAAGTAATGATAATTCATGGGAAAGTTTGATTGAAATAACTAAAACTTCAGAAACTTCTAAATTACAGCAATTAGTCGATAAAATAGACAATAAGGTATCTGATCCTAACGAATGCATAGTATGCCATCGAGTCCTATCTTGTAAAAGTGCTTTACAAATGCACTATCGAACACATACCGGTGAGCGACCGTTTCGGTGCAAGCTCTGTGGTCGAGCTTTCACAACTAAAGGTAATTTAAAGACCCATATGGGTGTCCATCGTATTAAACCACCATCACAAATGTTACATCAATGCCCAGTTTGTCATAAAAAGTTTTCTGATCCCACCATACTTCATCACCACATACGGCTTCATACAATTGACCGAGGTAACATTTCTTTCGATCAGGTCCGCGGTATTGAAATCAACTATTTTCCTCAATTCAGTAATACTTCCGATGCCAGTGAATTCACACCCTACCGACCTATCCCACCCTCTATGTTTCCTACTCCGTCCACTCCCGGCGACCGACGGGCGGACTCCCGCGGAACCGACGATGAGAGCGGCCGGGACGAGCGTGAGCCCGCTACTCGGGAGTTCGACGACGACTCTGAAATGAAGGATCGTCGAACTTCGCCGCTCTCCGTCTGCGCCTCGGCGTCCGAATTCGAAGTTAAAACCATCACAACAACGGCTTCCCTCCCATCGGCGACAGGTTCGGAGAGCGGGCGGAGCGCGCAGGCTTCGCCGCCGTCGCCATCGCTGTCGTCGCTGTCGACGCCGCCGCGGCTGCCGCAGCACTCACCGCTGCCTTCACCGCCCACGCCCCTTGCTGCGCTCGGTGCTCTCGGTGGATCGCCCTTCAGCCCACTTGGACTCGCGTTTCCTCCCGCAGTGCGCGGCAACACAACGTGTAACATCTGCTACAAGACATTCGCCTGCAACTCTGCTCTGGAGATCCATTACCGCAGCCACACTAAGGAACGACCGTTCAAGTGCACTGTCTGCGATCGTGGATTTTCTACAAAGAGCAGTGGCGGCGGTTGCCAGTGCGGTAGGCGCGCGCGCGCACCCCGCCCGCCGCACGCCACTGCTTTGGATCTCTGGAACGCCTTCGTCTATCCGgGAAATATGAAGCAACACATGCTGACGCATAAAATACGCGACATGCCTCCCGGCTTCGATAAAGGGGGTAATGGATCAATGGGACCAAACGAAGAATCTCGTGAGCCTAGTCCGGACAGACGCTCGTCCCCTGACAAGATGGACCTCAAAAGGTCTCCACCCGCTCATCCGCCTCCACCTATGACACACGCTCCGCCGATCGACATGCCACCACTGCCGAAACGACCGACCGTACCAAGTACTCCAACCCACCAACCACCATCAGCGTCCTCGAAACACTTATGCGGAGTATGCCGCAAAAACTTCTCATCGTCGTCCGCGCTCCAAATCCACATGCGCACTCACACGGGCGACAAACCCTTTCGCTGCGCTGTCTGCCAAAAAGCTTTCACCACAAAAGGAAATCTTAAGGTGCACATGGGGACGCATATGTGGAGCGGTGGAGCCTCGAGACGCGGGCGTCGAATGTCGCTCGAGTTGCCGCCACGCCCCCTACACGAACCGCACGACCTGCTCCGGCGACCTGATCTCTTCTACCCCTACTTACACGCGCCCTTCCTTAATGGCATGCAGCAAAAGCTGAATGAGATATCAGTGATACAGCAGAGCGCCGGGCAGAACGGTGTGGCAGGCAAGTTCCCGGGACTGCTCGGTTTTGGTGCGTTTGGCGCAGGTCGGCCTGGCGCAGCGTCGCCGCTTGAACGGCCGCCGTCTTTAGACGGTGGCGATGAGAGACAAGCGGCAATGCGAGAACTAGCAGAACGCGGCCGGGAACTCGCCGAGCGAAGTCGCCAAATGCGCGAGGACAGCGAACACTATCGCTCACCACCAGCTCTCGCGCCCCATCAGCCACCCTCCGCACAGCCCTCTCCACCTACCCCTCACCATCCACTCCCCCACTCCCTAGCCTCGCTTCCACCCCCAGCCAGGACTGAAGGCCTAACCGTCTAA
- Protein Sequence
- MQTFFLFIYTTSGPLIPGDSSGSCSEEEINNVLPEDPRDRPVAHMCPRCQEQFENLHDFLYHKRLCDEKAIQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATAMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDEQRLSPPPNEPEPVVPAPPAPSPSPPRPPREPSPPIPTPPTSQNLPSTHSHLTPKTEPITIPKIPTSSPPMMTHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPIPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPAPFPPSLPLYRPPHHDLLPPRPLGDKPLPPHPLFAMREEQDAPADLSKPSVPSPPRAPEMFKSEPQDDECQRESSFEDNDRVSPKRELEENDAGQDAEQDRYPSTSPYDDCSMDSKYSNEDQIGRESPHVKPDPDQPENLSSKNSPISGPISIATGLRTFPSYPLFPHSPPSSISSGSLTPFHNIPHGVVEPDLARDPVFYNSILPRPGSNDNSWESLIEITKTSETSKLQQLVDKIDNKVSDPNECIVCHRVLSCKSALQMHYRTHTGERPFRCKLCGRAFTTKGNLKTHMGVHRIKPPSQMLHQCPVCHKKFSDPTILHHHIRLHTIDRGNISFDQVRGIEINYFPQFSNTSDASEFTPYRPIPPSMFPTPSTPGDRRADSRGTDDESGRDEREPATREFDDDSEMKDRRTSPLSVCASASEFEVKTITTTASLPSATGSESGRSAQASPPSPSLSSLSTPPRLPQHSPLPSPPTPLAALGALGGSPFSPLGLAFPPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCQCGRRARAPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDMPPGFDKGGNGSMGPNEESREPSPDRRSSPDKMDLKRSPPAHPPPPMTHAPPIDMPPLPKRPTVPSTPTHQPPSASSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLHAPFLNGMQQKLNEISVIQQSAGQNGVAGKFPGLLGFGAFGAGRPGAASPLERPPSLDGGDERQAAMRELAERGRELAERSRQMREDSEHYRSPPALAPHQPPSAQPSPPTPHHPLPHSLASLPPPARTEGLTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00689616;
- 90% Identity
- -
- 80% Identity
- -