Basic Information

Insect: Parnassius apollo
Gene Symbol: Bcl11a
Assembly: GCA_907164705.1
Location: CAJQZP010001449.1:14047197-14089896[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0053 0.54 11.5 2.1 2 23 72 93 71 93 0.96

2 12 0.0071 0.72 11.1 0.5 3 23 101 122 99 122 0.94

3 12 0.039 3.9 8.7 0.1 2 23 130 152 129 152 0.90

4 12 0.00051 0.051 14.7 4.0 1 23 158 180 158 180 0.95

5 12 1e-06 0.0001 23.2 1.5 1 23 186 208 186 208 0.98

6 12 0.0015 0.15 13.2 1.4 1 21 214 234 214 235 0.93

7 12 0.099 10 7.5 1.8 3 19 256 272 255 277 0.92

8 12 4.6e-05 0.0047 18.0 4.2 1 23 572 594 572 594 0.98

9 12 1.6e-05 0.0016 19.4 0.6 1 22 601 622 601 624 0.89

10 12 0.00027 0.027 15.5 0.5 1 23 632 655 632 655 0.95

11 12 4.1e-05 0.0042 18.1 1.4 1 23 661 685 661 685 0.97

12 12 7.7e-05 0.0078 17.3 1.1 1 21 691 711 691 712 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0053	0.54	11.5	2.1	2	23	72	93	71	93	0.96
2	12	0.0071	0.72	11.1	0.5	3	23	101	122	99	122	0.94
3	12	0.039	3.9	8.7	0.1	2	23	130	152	129	152	0.90
4	12	0.00051	0.051	14.7	4.0	1	23	158	180	158	180	0.95
5	12	1e-06	0.0001	23.2	1.5	1	23	186	208	186	208	0.98
6	12	0.0015	0.15	13.2	1.4	1	21	214	234	214	235	0.93
7	12	0.099	10	7.5	1.8	3	19	256	272	255	277	0.92
8	12	4.6e-05	0.0047	18.0	4.2	1	23	572	594	572	594	0.98
9	12	1.6e-05	0.0016	19.4	0.6	1	22	601	622	601	624	0.89
10	12	0.00027	0.027	15.5	0.5	1	23	632	655	632	655	0.95
11	12	4.1e-05	0.0042	18.1	1.4	1	23	661	685	661	685	0.97
12	12	7.7e-05	0.0078	17.3	1.1	1	21	691	711	691	712	0.96

Sequence Information

Coding Sequence: ATGGATGCAAATCTTTCGTTTTTTAAATTCCCTTTTGTAGACGTTGAACCTCTTGAAATAGACTTCAATAAAAGCAAACCACAAGATAGCTATGATGATCTTCAAAAGGCACCACCTCACGGAGGTCTCTTGGCTACGGACGATGTATTAGCTCAATTTTTATCAGCAGAAGGACCTTTGGAAGAACCCGACTTAAATGGACCCACAACTTTACATTGCGAAATTTGTAGGAAAAAGTTTGATAATGCTAAAAAGTACTATGGACATCTAAGAGTTCATTCCAATCAAAATCTTTGGATTTGCGATAAATGTCCAGATCAGAAATTTTCAACAAAACAGCAGCTCATGAAGCATGGATTAACACATAAGCCATTGACTAGGGTTTGGAAGTGTCCACAGTGCACAATGGCCTTTGAAGCTCTCTGGAGTTTACAACAGCATCTGTTTGGAAAACATTTAGATTACAGACCACACAAATGTGATCAATGCGAAAAAGCTTTTTACAAATTATCAGATCTAAAGAAACACAAGTACTTGCATAGTGATGCAAAAAAATATCCATGTCCAACCTGCCAGTTACAATTTAGAGATAAATCAAATTTTAAGCGACATTTATTAACACACACCAATGAGAAACCATTCTGCTGTCCTGGTTGCGGAAACAGATTTAAGCAGTTGGCTTCTATGAATAGACATAAACAAAACTGTGCAATAAACATCAGGAACCAAAATGAAATTGCGGATAAAACTGTTAGAAAAAATCATTGTAGAGTTTGTGGTATGACATTTCAATATAAAAGTGCATTGCTGGAACATTGTGTCAgAATACATACTAATCCAACAAAAGAGTCTAGTAAAGATGACAAAAATAACCCAATTGTCGCAGATACGAACCGAACTGTAGAAAACATTGTAGATGATATTTTATCAGCGGAAGACGACTACATGATCATGCCAACTCAAAGAGAAATGGAAACATTTAATAACCAGTATAGCTCAGACCCTGCAAATGATGATTATTTAATGCAAATGCAAGTCGAATTTCTAAAAGAAATGAAACAGTTACATATTTTAGATGATGAATTACTTTATAATGATATTGATTTGGATAGTTTTCCAACTAACCAAGTCTTTAACCCACAACGTTTGGACGCAACAACAACAAATGATAGAAACGCTGAAATACTCTTTGATTTCACTGATGGTAAGAGTATGGATCAGGATATTATGAATGCCTTGTATCAGGTAAAAACTGATAATTTCCCAGAGGATTTACTAAATGTACCTAATATTGGCAATTTTAATGATAAACCAAATGAATTGGATCCTCCTTTATCAGTTAATGAATGCGCCACAATATTCGAAAGTGACGTCGATTTAGAAGCTAGCACAAACTTAGCCGCTTATTTGAATCAGTTAATTGGTGAAAATAGTGTGCAATATATATCAACGGAAGATGATGACACATTTATTATAAGTTTGAATAGTGGAATTGATGCAGAACAATTGACGGATATGTTAAATATAGGAGTAGAGCTGACAGAAGAAAAAAATAATCCAGCAGAGAAAGTTCCAGAAGCTGATAGTGCAAATCATGTGGTGAATATTGCAGACCCAATAATACTAGAAATAAGTGAAGTTAAACAACCTACCACTAATGAGGAAAAGAAAAACGTGCAAAATGTTaagacaaagaaaaaaaagagagTAATTTTTGTATGCAGGACGTGCAATAAAGTTTTCAAAAATAAGGATTGTTATAAATCTCATATTGCGACACATGAGCCGTCACTGCGTCGTCACGTTTGCGAAGTGTGTGGCGAGCGCTTCAGCTACCGCTCCACCCTCAACAAGCACCGAGTCGCCGCGCACGAACCTCGCGTTCTACCCGAGCACGCGTGCCAGCAATGCGGGAAGACATACCGCGCCGCGTGGATGCTAAAGAATCACATTGAACGGGACCACGAGAGGCTGATGCCGTACGTGTGCGATGAGAAACAATGCGGTAAAAAGTTTTACAAGAAATCTGATCTCGTTGTACACAAAAGATATCACACGGGCGAGCGTCCGTACGTGTGTGACATTTGCAAGAGCTCTTTCCCGCATGTGTCCCATCTTAAGAGGCATGTACGGAGCGTGGACTGTACCAAAAGAGTGAGCAAgcaatga
Protein Sequence: MDANLSFFKFPFVDVEPLEIDFNKSKPQDSYDDLQKAPPHGGLLATDDVLAQFLSAEGPLEEPDLNGPTTLHCEICRKKFDNAKKYYGHLRVHSNQNLWICDKCPDQKFSTKQQLMKHGLTHKPLTRVWKCPQCTMAFEALWSLQQHLFGKHLDYRPHKCDQCEKAFYKLSDLKKHKYLHSDAKKYPCPTCQLQFRDKSNFKRHLLTHTNEKPFCCPGCGNRFKQLASMNRHKQNCAINIRNQNEIADKTVRKNHCRVCGMTFQYKSALLEHCVRIHTNPTKESSKDDKNNPIVADTNRTVENIVDDILSAEDDYMIMPTQREMETFNNQYSSDPANDDYLMQMQVEFLKEMKQLHILDDELLYNDIDLDSFPTNQVFNPQRLDATTTNDRNAEILFDFTDGKSMDQDIMNALYQVKTDNFPEDLLNVPNIGNFNDKPNELDPPLSVNECATIFESDVDLEASTNLAAYLNQLIGENSVQYISTEDDDTFIISLNSGIDAEQLTDMLNIGVELTEEKNNPAEKVPEADSANHVVNIADPIILEISEVKQPTTNEEKKNVQNVKTKKKKRVIFVCRTCNKVFKNKDCYKSHIATHEPSLRRHVCEVCGERFSYRSTLNKHRVAAHEPRVLPEHACQQCGKTYRAAWMLKNHIERDHERLMPYVCDEKQCGKKFYKKSDLVVHKRYHTGERPYVCDICKSSFPHVSHLKRHVRSVDCTKRVSKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01160002;
90% Identity: iTF_01160002;
80% Identity: -