Basic Information

Insect: Parnassius apollo
Gene Symbol: -
Assembly: GCA_907164705.1
Location: CAJQZP010000693.1:20646391-20668507[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.3e-06 0.00095 20.1 0.2 2 23 197 219 196 219 0.95

2 12 4.4 4.5e+02 2.3 0.2 5 23 228 246 227 246 0.92

3 12 0.00026 0.027 15.6 3.0 1 19 280 298 280 303 0.92

4 12 3.9 4e+02 2.4 0.1 5 23 312 330 310 330 0.93

5 12 0.0044 0.44 11.7 0.3 3 23 338 358 336 358 0.96

6 12 7e-05 0.0071 17.4 5.4 1 23 366 388 366 388 0.97

7 12 0.00069 0.07 14.2 2.0 1 23 397 420 397 420 0.97

8 12 0.00019 0.019 16.0 0.2 1 23 426 448 426 448 0.97

9 12 6.5e-07 6.6e-05 23.8 2.5 1 23 454 476 454 476 0.98

10 12 0.00091 0.092 13.9 0.6 1 23 481 503 481 503 0.97

11 12 9.4e-06 0.00095 20.1 5.8 1 23 509 531 509 531 0.97

12 12 0.00026 0.026 15.6 1.4 3 23 539 560 537 560 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.3e-06	0.00095	20.1	0.2	2	23	197	219	196	219	0.95
2	12	4.4	4.5e+02	2.3	0.2	5	23	228	246	227	246	0.92
3	12	0.00026	0.027	15.6	3.0	1	19	280	298	280	303	0.92
4	12	3.9	4e+02	2.4	0.1	5	23	312	330	310	330	0.93
5	12	0.0044	0.44	11.7	0.3	3	23	338	358	336	358	0.96
6	12	7e-05	0.0071	17.4	5.4	1	23	366	388	366	388	0.97
7	12	0.00069	0.07	14.2	2.0	1	23	397	420	397	420	0.97
8	12	0.00019	0.019	16.0	0.2	1	23	426	448	426	448	0.97
9	12	6.5e-07	6.6e-05	23.8	2.5	1	23	454	476	454	476	0.98
10	12	0.00091	0.092	13.9	0.6	1	23	481	503	481	503	0.97
11	12	9.4e-06	0.00095	20.1	5.8	1	23	509	531	509	531	0.97
12	12	0.00026	0.026	15.6	1.4	3	23	539	560	537	560	0.95

Sequence Information

Coding Sequence: ATGACCATGAATATAAAAGAATTATGTCGACTGTGTGCAAAGGAAGATGAATTTACGAAAGACCTGTTACACGACAGCAATCAGAATCTTCTTAAACTAATCAAAGAATTCATGCATATtattGtcagtgatgatgatgaattaccaACAAAGATTTGCTTAAACTGTGAAGAAAAAATGGTCGACTTTCAGTTGTTTGTTTTAGAATGTGGCAAAGTTCAAAAAACTTTAAAGGATATGTGTGGAGGAAGTATTGCAATAAAATTAGAAGATGCATGTGAAATAGAAGTTCCTCAAATTAAATCTGAGgttaaaattgaaataacaacAGAAGACATTGGGTGTAATATAAATAATGGGGCTTCGTTATCAGACTTCGAGGGAGATGATGATATTGAAGATGAGGACTTTGTTGACACTGGCGATGACTGTGATGATGGGGACTCCTTGGATGATGTATCTATTGCCTCTTTgaagaaaatgaaaaagaaacGCTTAAAAAGAAAGCCATTGACTGAAGAAGAAGCAAATGAATTTCAAAAAGTTTTACAAAGTTCAAATTTCAAAGTTAAAGATATTGTAAAaTTAAAATGTGATGTCTGTGAAGAGTCTTTCAAGTCTTGGAGTGCATTACGTGTTCATTATGCAAAGAGTCATAAAAGCAAACCTCTTGTGTTTTGTATCTGTGGGTTCATCATAAGATCAAAAAGTGTCCTTTACAAACATGTTTCCGATCATAAGATTGAAGGCAGAAAGTTATGTAAAAATGTGGATTCCGATACAGATAAGCTAGATGAATTGAAATACTCTCGGCTTAATGTTAAAGATTTTATAAAttttgtatGCAATAATTGTCAGAAACAGTTTTCGAGTTGGTACACATTGAAGGCGCACTGTCTGAACGATCATAATATTTTACCAGTGGTGAATTGTGTATGTGGAATTGCATTAAAATCCAAATCAGTTATGTATAAACACGTTCAAGACCATAAAAACCCGAATGTTTTAGcTTGTGATAAATGCCCgagaataacaaaaacaatagaaGCGCTGAACAAACACAAATTGAGACATATACCAAAGTCAGAGAGAAGGTTCTGTTGTTCATTAtgcaataaaacttttaatagtaAAGATACTTTGAAATCACACGAAAAATCGCATATACCAATAGAAGAGAGAAAAATATACCACTGTGACATGTGCAATATGAAGTTTACGACGCGTTCTTCGGCTGCGTCACACAAGCGAGTCGTACACGAAAAGATCAAGAGTTACGTGTGCGATCTTTGCGGGTACGCGTGTGGGACCAACGGCGAGTTGCGTCAGCATCGAGCCATACATAGCGACGACAAGCCTTACGTTTGCAGAAAGTGTTCGAAGCCGTTCAAAACATATTCAAATTTGAAGACGCACATGGACACGCACGAGGACACGTCGTACGCTTGTTACGTGTGCAGCCGCGTACTGAACAGTCGCCGCACGCTGCGCAAGCACTTGCTTGTGCACGAAGACAAGTGTCAACACGTCTGTTCCTACTGCAACAAGGCATTTAAACGACGCCAGACTTTGAAGGTCCATATGCACATGCACACGGGCGACAAGCCGCTCGCTTGCAAGTGGTGCGACGAGCGGTTCGCGTACGCGTCCACGCTGCGCTCGCACCGGCTGCGCTGCCACCCGGACAAGATGGCCGCGCAGTCGCACGCGCCCTCCTACGATGTACTCGCGCAGGCGATACACCACGAATTACTCAAAAACGATTCATCAGCGAATATAACCAAGAATGAAGTAGAAGCTATTTAG
Protein Sequence: MTMNIKELCRLCAKEDEFTKDLLHDSNQNLLKLIKEFMHIIVSDDDELPTKICLNCEEKMVDFQLFVLECGKVQKTLKDMCGGSIAIKLEDACEIEVPQIKSEVKIEITTEDIGCNINNGASLSDFEGDDDIEDEDFVDTGDDCDDGDSLDDVSIASLKKMKKKRLKRKPLTEEEANEFQKVLQSSNFKVKDIVKLKCDVCEESFKSWSALRVHYAKSHKSKPLVFCICGFIIRSKSVLYKHVSDHKIEGRKLCKNVDSDTDKLDELKYSRLNVKDFINFVCNNCQKQFSSWYTLKAHCLNDHNILPVVNCVCGIALKSKSVMYKHVQDHKNPNVLACDKCPRITKTIEALNKHKLRHIPKSERRFCCSLCNKTFNSKDTLKSHEKSHIPIEERKIYHCDMCNMKFTTRSSAASHKRVVHEKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPYVCRKCSKPFKTYSNLKTHMDTHEDTSYACYVCSRVLNSRRTLRKHLLVHEDKCQHVCSYCNKAFKRRQTLKVHMHMHTGDKPLACKWCDERFAYASTLRSHRLRCHPDKMAAQSHAPSYDVLAQAIHHELLKNDSSANITKNEVEAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01402880;
90% Identity: iTF_01157045;
80% Identity: -