Basic Information

Insect: Parnassius apollo
Gene Symbol: -
Assembly: GCA_907164705.1
Location: CAJQZP010000150.1:2150940-2213249[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00026 0.026 15.6 3.4 1 23 236 258 236 258 0.98

2 11 0.00024 0.024 15.7 6.5 1 23 264 286 264 286 0.96

3 11 9.1e-05 0.0093 17.0 4.5 1 23 292 314 292 314 0.99

4 11 0.0012 0.12 13.5 1.3 1 23 320 342 320 342 0.96

5 11 2.2e-05 0.0022 19.0 0.8 1 23 348 370 348 370 0.97

6 11 1.5e-05 0.0015 19.5 0.0 1 23 376 398 376 398 0.97

7 11 5.3e-05 0.0054 17.7 0.4 1 23 403 425 403 425 0.96

8 11 0.31 31 5.9 0.2 3 15 433 445 432 448 0.88

9 11 2.6e-05 0.0027 18.7 0.4 1 23 504 526 504 526 0.97

10 11 0.0023 0.24 12.6 4.0 1 23 589 611 589 611 0.96

11 11 2.8e-05 0.0028 18.6 4.3 1 23 621 643 621 643 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00026	0.026	15.6	3.4	1	23	236	258	236	258	0.98
2	11	0.00024	0.024	15.7	6.5	1	23	264	286	264	286	0.96
3	11	9.1e-05	0.0093	17.0	4.5	1	23	292	314	292	314	0.99
4	11	0.0012	0.12	13.5	1.3	1	23	320	342	320	342	0.96
5	11	2.2e-05	0.0022	19.0	0.8	1	23	348	370	348	370	0.97
6	11	1.5e-05	0.0015	19.5	0.0	1	23	376	398	376	398	0.97
7	11	5.3e-05	0.0054	17.7	0.4	1	23	403	425	403	425	0.96
8	11	0.31	31	5.9	0.2	3	15	433	445	432	448	0.88
9	11	2.6e-05	0.0027	18.7	0.4	1	23	504	526	504	526	0.97
10	11	0.0023	0.24	12.6	4.0	1	23	589	611	589	611	0.96
11	11	2.8e-05	0.0028	18.6	4.3	1	23	621	643	621	643	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCAACGCCAAGTAATGTGTCGGGCTTCGGTTATTCATGGGGTTTTACCAGTTCCGCCGATCTCACGAAGTGTGAGGTGGAGACACCTAGCAGTCTAAGTTATACTTTAGGTAACACGGTTTCACCAGAAACCACTTTGACTGTTATGTCACACAAGACTCCACAAGTGCAGGAAAAAGTTGGCACAGTTGCAGTGGCAGTATCAAATTCAGCAGCACAGGTTACAAGAGTAGTAGCAGGAACACCAGTCACAGCACGTAGAATGTTTGTTGTAAATGAGGCACCTGCACACACCCTAAACAGGGTTACACAGCAAAATCAAACTGCCACAATACAAaCCACAAATCTGGCATCAAAACCATTTCTAACACCAATTGGTCCTATCCAGTTAACGGCAGAAGAATGTAATGAAATTTTAATGAAACGAGCACTACAAGCTCAGGGAATAGCAACACCAGTAATAGATGCATCACAGTTAAACCATACATTGTTAAATGGCAGTCTGAAAACCATAACAGAGGTAGCTCAGTCACAAGCAGACACAATTCAAACATCAACTATTCATCAACACTTGTTGCATACCAAGCAAGAGCCTGGGACAACAAATAATTCACCCAAAGCAATATTTTCACAGACAGAGTTGCTGAACACTGCAGTGCTGATGACGAGTGCTCCACCCGCCGTTAAAGAGCGGCCGTATTCGTGCGACGAGTGTGGCAAGTCATTCCTGTTGAAACACCATCTAACAACACATGCAAGGGTCCATACCGgtgAACGCCCCCACGTGTGTGCACATTGCGGTAAGGCATTCGCACGCAAGCACTGTCTCAATACGCACTTGCTGCTTCACTCTGCAGACCGTCCCTACAAGTGTCAAGAGTGCAAGATGGCGTTTACATTGAAGCATCATCTTGTTACGCATTTGAGGGTGCACAGTCGCGGGCGGCCGTTCATGTGCGGCGAGTGCGGGCGCGGGTTCCCGCTGAAGCGACACCTCGTCACTCACAGCAAGTACCACGCCGGCGAACGACCATACGTCTGCAGCGATTGCGGCGAAAACTTCGCGCAGAATGACCACCTGGTGATGCATAGTCGGTTCCACGGGTCGCTGTCGCCGTTCGTGTGCCCGGACTGCGGCGCGGCGTTCGCGCGCAAGTTCCAGCTGGTGCAGCACGGGCGCGCGCACGGCCGCGTGCCGCACGCCTGCCCCGTCTGCGGCAAGGAGTTCCTGCAGAAGCGCACCCTCGTGGCGCACATGAAAATCCATACGGGAGAGGGAGTTGTTGCGTGCTTCGAATGCGGCGAGGCGTTCAAAAcacaacaacaacaacagcagCAGCAACAGCAACAGCAACAGCAGCAACAACAACAACAGCAACAACAGCAGCAgcagcaacaacaacaacaaacaacTGTGATAAAGCAAGATGATTTCAAACCACAAATAgttcagGTTATTGGTGCTGATGGTCAAATACTAACAGAAAAAACATCTCCAGGATATGCATGTCCAGAGTGTGGGTCATGTTTCAACACAAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCATGCGGGCGACCGCACGTGCGTGACCGACCTGTGCGCGCTCACCGCCGCGCTGCAGCCCGGCCTCGTCGCCGCGCACCACGCCTCGCACAgtcAACCAATTCAAATAATTTCTTCAAACCCCAACAATGTTGTACATACGCAAGTTATAGCAGCAAATCATCATATGACTCCGCCAAGGCCTAAAATTCACTTTTGTGCTGACTGTGGTAAAGGTTTCGCTGCTAAACACGGGTTATTGTCACATCATAGAAGACACCCTGACGGCAGTTGTACATTACGAACTCACGTCTGTGATCAATGTGGAAAAGCATTCTTCCAGAAAAACCATTTAATGTTACATCAGAGGCAACATATGGATCTCCCGCCCAGATCTAGCCAAGTGCAGCAACAGCAGACGACGCAACAAGCACAACAGCAAGCACAGCAGCAGGCGCAACAACAAGCGCAGCAGCAAGCAGCGCAGCAGGCCGCGCAGCAGGCTGCACAGCAAGTGGCGCAGCAAGTGCAGCAGCAGGTGCAGCAGCACCAGCAGCAGCAGCAACAGCAACAGCAGCAACATCAGCAGCAACAGCATCAGAATAGCTTGGAGATCGAGCAGCAGGAACACCAGCAGCCCACACATATACAAGTGGTGACGAACCGGTCAGGGCAGGTGATCGGCAACCAGATCGTGGTGGGGACGGTGGGTGGCGTGGGTGGCGTGCAGCGGCGCCTGCTGGGCTCGCAGCTGCACATCATCGGGCGCGACGGCAAGCCACTCACCGCGCAGCTGCCGCACAAGCCCAGGCACCACAACGCCAGTGACGTCAAAGAAGTCGGTGGCCTGGTTCTGTCAACAGGTCGGGGTACTGGCTTGATCAAGTATGAAATCTCCATTCCACCTCCAACGTCTGTGGTCCAAGTGCAACAGTTAGACTGA
Protein Sequence: MCMPTPSNVSGFGYSWGFTSSADLTKCEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGTVAVAVSNSAAQVTRVVAGTPVTARRMFVVNEAPAHTLNRVTQQNQTATIQTTNLASKPFLTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGSLKTITEVAQSQADTIQTSTIHQHLLHTKQEPGTTNNSPKAIFSQTELLNTAVLMTSAPPAVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARKHCLNTHLLLHSADRPYKCQECKMAFTLKHHLVTHLRVHSRGRPFMCGECGRGFPLKRHLVTHSKYHAGERPYVCSDCGENFAQNDHLVMHSRFHGSLSPFVCPDCGAAFARKFQLVQHGRAHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVACFECGEAFKTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTTVIKQDDFKPQIVQVIGADGQILTEKTSPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAHHASHSQPIQIISSNPNNVVHTQVIAANHHMTPPRPKIHFCADCGKGFAAKHGLLSHHRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRSSQVQQQQTTQQAQQQAQQQAQQQAQQQAAQQAAQQAAQQVAQQVQQQVQQHQQQQQQQQQQHQQQQHQNSLEIEQQEHQQPTHIQVVTNRSGQVIGNQIVVGTVGGVGGVQRRLLGSQLHIIGRDGKPLTAQLPHKPRHHNASDVKEVGGLVLSTGRGTGLIKYEISIPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01402874;
90% Identity: iTF_01158146;
80% Identity: -