Papo001166.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- rst2_1
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010000080.1:1013102-1045051[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.014 1.4 10.1 2.6 1 23 141 163 141 163 0.98 2 14 1.6e-05 0.0016 19.4 1.3 1 23 169 192 169 192 0.98 3 14 0.017 1.8 9.8 6.1 1 23 197 220 197 220 0.93 4 14 6e-06 0.00061 20.7 0.4 2 23 389 410 388 410 0.98 5 14 0.00016 0.016 16.3 3.3 1 23 416 438 416 438 0.98 6 14 0.03 3 9.1 4.4 1 23 501 523 501 523 0.96 7 14 0.041 4.2 8.6 0.6 1 23 530 552 530 552 0.98 8 14 0.012 1.3 10.3 4.8 1 23 558 580 558 580 0.95 9 14 2.7e-06 0.00027 21.8 0.8 1 23 586 608 586 608 0.96 10 14 0.0024 0.25 12.5 2.1 1 23 617 639 617 639 0.98 11 14 0.00016 0.017 16.2 1.2 3 23 687 707 686 707 0.97 12 14 0.013 1.3 10.2 6.3 1 23 724 746 724 746 0.96 13 14 1.3e-06 0.00013 22.8 0.6 1 23 752 774 752 774 0.98 14 14 3.8e-07 3.9e-05 24.5 3.1 1 23 780 803 780 803 0.98
Sequence Information
- Coding Sequence
- TTGTTAGCTGAATTAGACATTCACATTGCGACACACAAGGACAGAATAACAAGTTATGGTTTGAgactaaaaaatcaaataaaaaggaaGAAACTGAGAAAGGAACAGAAAAAGTTGAAAAAGTTAAAGAAagcaataaaaaaggaaaaagtgtTTGAATTTGATGTAGAAATCAAACCCGAGGATGGTTATATAGGTAACGTAAAAGCTGAACAATTTAAGCCAGAACATAATGACATTATAAATAatgatcatcaaaaaaccaatgCCTTGATTAATGGTGAAAATGAAGTCATAGAAAATCAATCAAAAATTGATATCCCCTTGACGGAAGCGCAATCTGACTGTAAAGAAAAATCTAAGGAaaacaataagagaaaaaatgacAAAGATCAAACAGACTACAACATAGAAAAGATGTTCAAATGTTTTGCTTGCCAAAAGCAGTTCATGTTGAGCTATTACTTAAAATTACATGTTAGATCTCACACAGATGAAAAACCCTACACATGTGCTGAGTGTGGACAGTGCTTCATAACGGCCAGCAAGTTGGGAAGGCATACTAAAAGGATCCATTTGGCCATTCGACATCAATGCAGAATCTGCTACAAATATTTCTCCAGATTTGAATATTTAACAAGGCATTTTGATAAAAAACACCCAGAGGATAAATTGGAAGGAGAGCCATATGattaCAATGCCATCTTGCCATATCTTAAAGAATTAGAGGAGCAGTTACAAGTGAAGTCCGAAGAAACAACAAAGACACAAGATTTAAAACCAAAATCAGACAACCTTTGGGACGATTGGCCTTCAGAAGACCTTCAGACAGGTTGCAAAGCGGAGCAAAATGAAGTTGTCGGGGAACCTTTGATGCAAACAGATATTCATATAGCCGATGAGAGAAAAATCATAGATTTGAACCGTCCGACAGATGAAGATGGATCAAATAAAGAATTTAGTGTGGATGTAGAAGTAAAGAAGGAAGATGAAGATTATAATGAGATGGACAATGATGAAGTTGGTAAAGACGACAGTGTGAAGGATGATAGCTTCTCTGACGAGGACTACTTTCCCTCAAACACATGGGCAGCCACACCAAAAATGGAGAGTGACCCACCATCAACGGTCACGCAGAAGCGGCAAAAGCAAGACGGTCCCATCAAATGTGAAGTCTGCGAGAAATCAATCAGTTCTCTGTCCTACCTGAGGATCCACATGAGGACACACACCGGGGAGAAGCCGTTCAAATGTTACATTTGTAACCGAGGGTTCATCACGTCAAGCAAGATGCACAGACATGTGCTTACTCATTCGGAAACATGGGATGAAACGTCGAATCTCAAAGAGGAGGTCAAATCTGAACTAGATTCGGACAcggttaagaaaaagaaaaaacgcTCCAAAGAATCCTCAACGAAGAAGGCAAAGGCGAAGTTCTTGAAGAAGTCTAAGCGCAGCACAGCTGAGAAACAGAAGAAGCGTCACCAGAAACGGCCGCACGCCTGCGAGTACTGTCAGAAGCGGTTCCTACACCTGGAAACCCTTCAGGTTCACAAGAAGTCGCACGAAGGTGAAGAGCTGGTGTTCAAATGCCACTTCTGCTTGATCAAAGTGGACGACGCTGAAAGCCTTAAGGAGCATGAGGCGACACATGAGGGTCCGAAACCCTATTTGTGTACATTGTGTGGGAAGACCTATAAGAAACGGGAGACTATGATGTACCACCGGAAGCACCACATACCAGAGAGGGAGTACGTGTGCGACATGTGCCCGAAGAGCTTCACGTCCCCATGCAAGTTGCAGAAGCACATCGCCGCCCACAAAACAGACAAATACGTTCTCCGCTACGAGTGTCCAGTTTGTGCTCACATGTTCAACACCAGATATCATATCAATATGCACCTCGTCACCCACCAGAAGGAAGGCCTAATCGTCGAGGAAAACCGCAGCGAAATTCTCGCAATGGTACTCCAAAACGCGCGCAGGATTCCGAAAAATCCGGACGCGACCGGAAACATGACTGACAAAGTGCTGCCCGACGAGCAGAGCCGGATGTGCAACATATGCGGCCAGGTGTTCCAGCATTTCTACTATCTAGAGGAGCACCTAAAGAGCCATGGCTCGAAGATCGCCCTAGAAGACGAAGGGAAGACGGAAGAGAAGAAGCACGTGTGCCAGGTCTGCAACAAGAGTTTCAAATTGCATTATTACTTGAAACTGCACAGTTTCACTCACACGAAGGAGAAACCATACATATGTCAGCAGTGTGGGAAAGGTTTCATTACCCGGGGCAAGTTGAAGAGGCATCTGGAAACGCATACGGGCTTGAAGAAATACCAATGTCATATATGCTATAAGTTCTTTACCAGACCGAGTTACCTCAGGATCCATGTACGGACCATACATGGCCCCCAAGATTTCAGGTTGAACAAGCAGTTCGAGGTTGACAGTTTAAAGGAGTCCGGTTAG
- Protein Sequence
- LLAELDIHIATHKDRITSYGLRLKNQIKRKKLRKEQKKLKKLKKAIKKEKVFEFDVEIKPEDGYIGNVKAEQFKPEHNDIINNDHQKTNALINGENEVIENQSKIDIPLTEAQSDCKEKSKENNKRKNDKDQTDYNIEKMFKCFACQKQFMLSYYLKLHVRSHTDEKPYTCAECGQCFITASKLGRHTKRIHLAIRHQCRICYKYFSRFEYLTRHFDKKHPEDKLEGEPYDYNAILPYLKELEEQLQVKSEETTKTQDLKPKSDNLWDDWPSEDLQTGCKAEQNEVVGEPLMQTDIHIADERKIIDLNRPTDEDGSNKEFSVDVEVKKEDEDYNEMDNDEVGKDDSVKDDSFSDEDYFPSNTWAATPKMESDPPSTVTQKRQKQDGPIKCEVCEKSISSLSYLRIHMRTHTGEKPFKCYICNRGFITSSKMHRHVLTHSETWDETSNLKEEVKSELDSDTVKKKKKRSKESSTKKAKAKFLKKSKRSTAEKQKKRHQKRPHACEYCQKRFLHLETLQVHKKSHEGEELVFKCHFCLIKVDDAESLKEHEATHEGPKPYLCTLCGKTYKKRETMMYHRKHHIPEREYVCDMCPKSFTSPCKLQKHIAAHKTDKYVLRYECPVCAHMFNTRYHINMHLVTHQKEGLIVEENRSEILAMVLQNARRIPKNPDATGNMTDKVLPDEQSRMCNICGQVFQHFYYLEEHLKSHGSKIALEDEGKTEEKKHVCQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGPQDFRLNKQFEVDSLKESG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -