Basic Information

Insect: Parnassius apollo
Gene Symbol: -
Assembly: GCA_907164705.1
Location: CAJQZP010001624.1:1639827-1646302[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.076 7.7 7.8 0.5 1 23 122 145 122 145 0.96

2 21 1.4 1.5e+02 3.8 0.4 3 23 171 192 169 192 0.92

3 21 0.0047 0.48 11.6 0.1 1 23 216 238 216 238 0.98

4 21 0.00035 0.035 15.2 0.2 1 23 242 264 242 264 0.98

5 21 3.5e-05 0.0035 18.3 0.5 1 23 269 292 269 292 0.96

6 21 0.01 1 10.6 0.8 2 23 299 321 299 321 0.93

7 21 0.097 9.9 7.5 6.3 1 23 328 351 328 351 0.96

8 21 0.0004 0.041 15.0 5.4 1 23 357 379 357 379 0.97

9 21 2.9 2.9e+02 2.9 0.4 1 10 533 542 533 556 0.80

10 21 0.0012 0.12 13.5 1.9 2 23 582 603 581 603 0.96

11 21 2.4e-05 0.0025 18.8 0.3 1 23 625 647 625 647 0.98

12 21 0.19 19 6.6 2.1 1 23 696 718 696 718 0.92

13 21 0.0007 0.071 14.2 0.3 2 23 746 768 745 768 0.95

14 21 2.4e-05 0.0024 18.9 4.4 2 23 792 813 791 813 0.97

15 21 0.038 3.9 8.8 0.3 2 23 817 838 816 838 0.96

16 21 1.8 1.8e+02 3.5 3.7 1 23 843 866 843 866 0.94

17 21 1.4 1.4e+02 3.8 2.8 2 23 878 900 877 900 0.93

18 21 0.0081 0.82 10.9 0.3 1 23 906 929 906 929 0.96

19 21 1.2e-05 0.0013 19.7 2.2 2 23 934 955 933 955 0.96

20 21 0.00018 0.018 16.1 2.2 1 23 961 983 961 983 0.97

21 21 0.011 1.1 10.4 2.0 1 23 989 1012 989 1012 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.076	7.7	7.8	0.5	1	23	122	145	122	145	0.96
2	21	1.4	1.5e+02	3.8	0.4	3	23	171	192	169	192	0.92
3	21	0.0047	0.48	11.6	0.1	1	23	216	238	216	238	0.98
4	21	0.00035	0.035	15.2	0.2	1	23	242	264	242	264	0.98
5	21	3.5e-05	0.0035	18.3	0.5	1	23	269	292	269	292	0.96
6	21	0.01	1	10.6	0.8	2	23	299	321	299	321	0.93
7	21	0.097	9.9	7.5	6.3	1	23	328	351	328	351	0.96
8	21	0.0004	0.041	15.0	5.4	1	23	357	379	357	379	0.97
9	21	2.9	2.9e+02	2.9	0.4	1	10	533	542	533	556	0.80
10	21	0.0012	0.12	13.5	1.9	2	23	582	603	581	603	0.96
11	21	2.4e-05	0.0025	18.8	0.3	1	23	625	647	625	647	0.98
12	21	0.19	19	6.6	2.1	1	23	696	718	696	718	0.92
13	21	0.0007	0.071	14.2	0.3	2	23	746	768	745	768	0.95
14	21	2.4e-05	0.0024	18.9	4.4	2	23	792	813	791	813	0.97
15	21	0.038	3.9	8.8	0.3	2	23	817	838	816	838	0.96
16	21	1.8	1.8e+02	3.5	3.7	1	23	843	866	843	866	0.94
17	21	1.4	1.4e+02	3.8	2.8	2	23	878	900	877	900	0.93
18	21	0.0081	0.82	10.9	0.3	1	23	906	929	906	929	0.96
19	21	1.2e-05	0.0013	19.7	2.2	2	23	934	955	933	955	0.96
20	21	0.00018	0.018	16.1	2.2	1	23	961	983	961	983	0.97
21	21	0.011	1.1	10.4	2.0	1	23	989	1012	989	1012	0.97

Sequence Information

Coding Sequence: ATGGATATACAAGGACCGGAAAAAAGGATCGTGCCGTTGTTCCAAGTGGAATACGACCGCAGCCTTTGTAGACCGTTGGGGACAGTAACCAACTTTAATAAGATGCTCGCTATGGCCAGGTCATCCAGAGTTATTGATATACCTTCGACAGCTTCACATAATTTCCTCCCTTCTAGAAGTCCTTCGCCTGTATCAATGGGCAACAGGACTCCGTCGCCCGATTTCACAGGTCACAATATATACGATAATATAGAAATTCCACCGCCGAGACAAATTTCGCAAAAACAAGCCGATAATCGGCAAAACGCACTGACCATCTTCGAGTACTCCACCGTGTATCCTTTCATCTACGGCAACAATAAGTTTAAATGCTTCATATGTTCTCAACCATTCCTAGAAACGCCACTGCTCAGGCGACACATGCAGGAAACACACACGTTTGCGCCCTTAAAAAGATTGGTAAACAATCGTAGGGAAAATGTCATCAAAGTGGACGTTAGCGAAATGAACTGCAAGCTCTGTTCAGTTAAACCTAAAGACTTGTACCAACTCAAAGTACATTTAAAGGAAGATCATCAAAAACTTATAGACCCAGAGCTAAAAGACAACATTATCCCATTTATATTAGACGGCGAAGACGGAGGGTATAAATGCGTCATGTGCGACGGAAGCTTCATTAAAGTCCGTACTCTTGTCATCCACATGAGTGTTCACTTTAACAACTACAGCTGTGAAATTTGCGGATCAGGTTTCATGACCTTGCGGCTACTTAAGAAGCATTTAGAGGTGCATGAAAGCGGCAACTTCCCTTGCGATCGCTGCAACAAAGTCTTCAGTACTACGTACAAGCTATCACTGCACATCAGAGGTGTTCATCTGAAACAATACCCACGTCGTTGTCCAATGTGTCCAGAAAGGTTCAATTCGAACTATAGACGGACCAAACACCTTCAGGACGTCCACAATCAATCGACTCGAGTGCACAAATGCGAGACATGCGGACGTGGTTTCAACCTCAAGTATCATCTGGTTTGTCATACACGTTCGGTTCATCTGCAAGAGAGGAACCATCAGTGTAAGGTTTGCTTGCAAAGGTTCTGCAATAAGGAAACACTGAAAAGGCATATGGTTATACATACAGGGGAGAAAAATTACAAATGGCTCATCCAAATAACAAATTCGTCTTTAATCCTGAAAGACGATGACGGCTCTGAGATTAAGTTAGCAGTTTTGAAGAAACCCATTCgaattgataatttaatttgccAATACGAAGAATCTGCGGATGTGGCATCGACAGAAATAACGTTAAATAAAGTACCTCGTGTGGAAAGAGATGCAGAAATAGATGAAGTTCCTGATCATGCAGTGGACAACAAGTCGTCGCTTATATTTTTGAAAGAGCCAATCTCTTTAGATGAAATTGGAATTGGAGAAAAAGTCTCAGTACAAAATTTGACGACTCGTAAAATATTTACAGGATACACTAGACCTCCTCGAAAAAAAATTGGACAGGAACGCCAAACTTGGAAGCAAAATGCGTTGACAATCTTCGAATTTTCGTACGTTTATCCATTTGTGCACGCAAGCAATAAATTCAAATGTTACGTTTGTTCGAAGCCTTTTTTAGACGCTAACATTCTTAGGGAACATTTTACAAATGACCACAGCTTTGAAGATTTGAGACAGGAAATTAGCAACAAGGTTCGAGACAAAACCTTAAAGGTAGACGTTGTGAGACTACAATGTAAACTATGTCATAATACTTTTCCCAGCTTGAAGGATCTGAAAGTGCATCTCAAAGATCACGGGAAGAAAATAGATCCCGAATTTCAAGATAACATTATACCCTTTAAGTTAGGTGGTGATATATTTGTTTGTCAAATTTGTGGAGAGAACTTCCGGAAACTAAGATTGCTTATAATTCACATGAGCAAACACTTCAACAATTACAGCTGGATAACGGCAAGGCAGCACCGAGGGCCAAGGACTAGTATTTGGCAAATGACAATATCGGAAAGGCAAAACGCGGCAACGTTTCTAGAGTTCACTACAGTGAAACCGTTCTTTTATCAGCAAGCAAATTTCAAGTGTTTCTATTGCAATGAAGTTTTCCCAGAGGTACACTCTGTACTGCAGCACACTTCGTTCCACGTTGCACCTGATAGGTGTAGTTTACTGAAGCAACATTTAAGAAAAGGCAAACGGGTTATTAAAGTAGATATATCGGAACTAAAATGTAAGCTTTGCGATCAAAAATATTCAGATTTGGACGACGTCAGAAAGCACCTTTCTGTCGCGCATAAGAAAGAATTTAACTCTGCCGGCAATGGGCTCATGGCTTACAATTTGAGCACGGAAAATGGCCTCTTATCTTGTCATAAATGCAACAAGACTTTCAATTCATTCTTCCTCTTAAACCGGCATATGAATGTCCATTTCAATGTAGTCTGTGAGACATGTGGACTTGGCTTCATGTCACATCAGCGCCTCATTAACCACAGGATCGTTCACCAGAACGGCGTCCACAAATGCGATAGATGTCAGGACGTGTTTCCCACTAAACTGAAACTACGTTATCACGTTTTTAAGAAACACGAGGTAATGAACGCGAAGAAGACGAAGCCGCTGAAGTGTCCGCATTGCTTGGAACGGTTCGCCGAACACTACCGAAAAATGACGCATTTGAGGGAGGTGCACGGTATAACGTTTACGTTCGAATGTCAAGTGTGCAAAGCTGTATTTCCTATGCGTCGCGCGCTCACGGAACACACGACGAAACAACACACACAGAAGATTCAGTGCAAAGTGTGCGGCAAATGCTTCGGCACTAAATCTCTTTTAAAAATGCACTCGAGGGGACATACAGGTGAAAGGAATTTCTTTTGCGGAATATGCCAGAAGGCGTATATGCACGAGCGGACTTTGAGGCAGCATATGCGAGTGCATGGACCCGTCTGGAAGTTCACGTGCTCGGAATGCGGTAGCGGATTCCATATCCGCAATGATTATAACAAACATATGAAGCAATGGCACCCACATTGGCAATTTAAGTCTATCGTTAAAAACGCTGGAACTACTCCTATAAACTGA
Protein Sequence: MDIQGPEKRIVPLFQVEYDRSLCRPLGTVTNFNKMLAMARSSRVIDIPSTASHNFLPSRSPSPVSMGNRTPSPDFTGHNIYDNIEIPPPRQISQKQADNRQNALTIFEYSTVYPFIYGNNKFKCFICSQPFLETPLLRRHMQETHTFAPLKRLVNNRRENVIKVDVSEMNCKLCSVKPKDLYQLKVHLKEDHQKLIDPELKDNIIPFILDGEDGGYKCVMCDGSFIKVRTLVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHESGNFPCDRCNKVFSTTYKLSLHIRGVHLKQYPRRCPMCPERFNSNYRRTKHLQDVHNQSTRVHKCETCGRGFNLKYHLVCHTRSVHLQERNHQCKVCLQRFCNKETLKRHMVIHTGEKNYKWLIQITNSSLILKDDDGSEIKLAVLKKPIRIDNLICQYEESADVASTEITLNKVPRVERDAEIDEVPDHAVDNKSSLIFLKEPISLDEIGIGEKVSVQNLTTRKIFTGYTRPPRKKIGQERQTWKQNALTIFEFSYVYPFVHASNKFKCYVCSKPFLDANILREHFTNDHSFEDLRQEISNKVRDKTLKVDVVRLQCKLCHNTFPSLKDLKVHLKDHGKKIDPEFQDNIIPFKLGGDIFVCQICGENFRKLRLLIIHMSKHFNNYSWITARQHRGPRTSIWQMTISERQNAATFLEFTTVKPFFYQQANFKCFYCNEVFPEVHSVLQHTSFHVAPDRCSLLKQHLRKGKRVIKVDISELKCKLCDQKYSDLDDVRKHLSVAHKKEFNSAGNGLMAYNLSTENGLLSCHKCNKTFNSFFLLNRHMNVHFNVVCETCGLGFMSHQRLINHRIVHQNGVHKCDRCQDVFPTKLKLRYHVFKKHEVMNAKKTKPLKCPHCLERFAEHYRKMTHLREVHGITFTFECQVCKAVFPMRRALTEHTTKQHTQKIQCKVCGKCFGTKSLLKMHSRGHTGERNFFCGICQKAYMHERTLRQHMRVHGPVWKFTCSECGSGFHIRNDYNKHMKQWHPHWQFKSIVKNAGTTPIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -