Papo014424.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- Zfy1_1
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010000975.1:4629527-4636052[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 9.8 9.9e+02 1.2 3.7 1 23 248 270 248 270 0.92 2 22 8.6 8.7e+02 1.4 0.1 6 23 282 300 282 300 0.94 3 22 0.59 60 5.0 0.5 3 23 311 332 310 332 0.94 4 22 0.078 7.9 7.8 2.9 1 23 502 524 502 524 0.96 5 22 0.00028 0.029 15.5 2.0 2 23 531 553 530 553 0.92 6 22 6.3e-06 0.00064 20.7 0.6 1 23 559 581 559 581 0.98 7 22 1.5e-06 0.00015 22.6 4.6 1 23 587 609 587 609 0.98 8 22 0.00096 0.097 13.8 1.3 1 23 615 637 615 637 0.97 9 22 0.00076 0.077 14.1 4.8 1 23 643 665 643 665 0.96 10 22 0.00043 0.044 14.9 4.4 1 23 671 694 671 694 0.97 11 22 1.5 1.5e+02 3.8 0.7 3 23 765 784 764 784 0.95 12 22 1.6e-06 0.00016 22.5 1.0 1 23 790 813 790 813 0.96 13 22 9.6e-07 9.8e-05 23.2 4.9 1 23 819 841 819 841 0.98 14 22 0.00067 0.068 14.3 0.1 1 23 847 869 847 869 0.98 15 22 7.1e-05 0.0072 17.4 0.7 1 23 875 897 875 897 0.98 16 22 0.62 63 5.0 1.9 1 23 962 983 962 983 0.96 17 22 0.0021 0.22 12.7 0.5 2 23 1133 1155 1133 1155 0.96 18 22 0.00018 0.018 16.1 0.1 1 23 1161 1183 1161 1183 0.97 19 22 8.4e-05 0.0085 17.1 0.6 2 23 1190 1211 1189 1211 0.96 20 22 0.0019 0.2 12.8 3.3 3 23 1219 1239 1217 1239 0.97 21 22 0.029 3 9.1 5.3 1 23 1245 1267 1245 1267 0.97 22 22 0.00014 0.014 16.5 2.5 1 23 1272 1295 1272 1295 0.97
Sequence Information
- Coding Sequence
- ATGAACAACAGTACGGAACAAATATTCCTTGTAAATTCTCCTGGAAATCAATCAGTAATTGGACCGCTAAAAATTTCTGAAAACACTACAAGCCAAGTCAACCTCGAGAATGTTGAAAATTTTTCAAATGTGTGCCGCACCTGTGCAACTATTACTGAATTTGTTATTCCGATCTTTATGGGAGAAGGCTTACAGAATAACCTAGcagaaaaaatacataaacatttacCAATCCAAGTATCAGAACAAGATGTCCTACCACGAGTGGTATGTTACCAGTGTGCCAGTACATTGTTGGCATGGCATGAACTTGTACAGTGCTGTGTGCAGGCTGACAAAGCACTGAAGACTCGCCTTGCAGTAATGCAACATAAGCAAAAGAGCTCAAAGCATGAAGCACGGGGAAACTTACACAAGGAATCTCAAGCAAAGTCAAGAAAATCTGTATGCGTTTCaagtattaaaaaagtattaatagaATATTTCAAATTATCAGATGAGGATTTGGATCATTCAGGTTTAGAGATTATTTGTGAAAAATGTAACAATGAATCGAGTTTTCAGACACTACAAAGTTTTGTTGAACATCTTAAGTTGCAGCATAATTTTGAAATCACAGACAAAAAGTCtgtagaaaattttataaaagaatatgtaTCTATTGTAGAGATGTTAGTTGCTGAAGATCAAATAGCTGATCTAGAGTCCGAAAAGGGAATGGTGGATATAAAAATTCCAAGATTCTATTGTCCCTTCTGTGAAAGCGCATTTTCTTCCACCACGCGCCTTTTTTGCCATTTGAATCAGCATGTTGATGTTTGTATTGAGGAGGGGGTCACATGCTGTGATAATGTTTATAAGGATACAAAATCTTTTGCAGTACATCTGCAAGAGCAGCATGTGAATCACCCACCAAATGCAGCAAATATATGTCAAAGTTGTGGTTTTATTGCTGAAGATAGTCAACATCTTCAGTCACATGTAAGTAAGGAACATTACGTAGAAAAATTTGACGTAAATTACGTCAAAGAAAGGCTGGAAAACCATGACAGATGGACACCCAGCCGCGTCAACTTCGACGCGTATCTTTCGAGGGTTGAAGCAAAAACTGaactaaaaaataatactataaaagTTCAAAATTTCAACGCCGTATCCGCAGTAGATGAAACCGTTGAAATGGACGATGGATCGGATGATGACCAACCCTTAGCTACAATAGCTACAAAAAAGTCGACtgatttgtataaaaaattcTATGATGCTCTTGTTAGTTTTAGGAACCATTTTGTCACCGAACACAAAGAAACAAAATGCGAATATCCAGATTTTACAGATTCAAGCGATTCTGAAGAGATAATGGACGATCAAAGCGAAGATGAAGATAAAAATGTGAACAAATTCGATGATTTGACTAAATGTAATATGCGTATAGATAAAATGAATGATGAGACTAGATTGGAACTGAATGAGGTGCAAAGAAAAATCAACGGGAAAGTCTTCTTTACATGTAAAATTTGCGATAAGAATTTAAGTTCGgcacatacatacatttttcaTAAACGAATCCATACGGGCGAGAGACCTTGCGTGTGTCACATATGTGGCAAACAATTCCGAGCCCCAAATGGCTTACAGAGGCACTTGACGGAAACGCACGAACGTCTACGACGTTACGCGTGCAGTTTCTGCCCAAAGAACTTTGCAAACACGCAAAATTTGAAGCAGCATATTCGTATACATACTGGCGAGCGGCCATTCGTCTGTACGCATTGTGGCAAAAGATTCACTCAGAGCGGCTCTCTGCATGTGCATTTGAAAACGCATAGCGAACAATTTCCGTTCCATTGCGCCGAGTGTGGTGCAAAATTTAGGCTACGAGCCGGTCTGACAAGGCACAGATTAAAACACAGCGGTGAACGGCCGCACGTCTGTGTGCAGTGCGGTAAAGGCTTCCGCCATAAGCACGACCTTTTCAGTCACGCGTTGTCCCACACCGACCCAAAACCACACACATGTAGTGTTTGTAACGCTGCATTTAGACAAAAGAGGGCATTGAAGCACCATTACAAAAGAGTGCATGAAAACGAACCTCCTAGAGAAGTCGTAAATCATTTAGTTTTCAATAATTTAGGACAGTATCATCCCATATTAAATGAATGTGAAGTGAAAGTGGAAAGATCAAGCGAGTTCGAAAGTGATAGCACACACGTAGAAAAGCAAAAAGATATAACAGAAACCATAAACAAATCGCTTACAATAGTAAACGAAGATGGCAAAAAATACGCGCACTGCGGCATTTGCGAGAAAAATGTTTCAGTTGGCTCCTGGAAAAGGCATGTGCGGTCGCACGTAGGCGAGAAAAGATATAGTTGTCACACTTGTGGGCTATCGTTTAATGACAGCGGTAACCTGGCTCGTCATAGAAGAGCCTTACACGCTAAACACCGACCGTTTTCTTGTCACATCTGCAATAAAGCCTTCACTAGAAGCAGCCACCTTCAAGACCATGTAAAATCCCATTCACAAAGCCGTGACTATGTCTGTGACATTTGTGGAAAAGCATCCAAGTCCGGAGCGGCTTTACGAATGCACAAAAAGATTCACGAAGATCAATTCAAATTCCAGTGCATGGAGTGCGATTCCAAATTCAAACGACGCGGTGAACTGAAAGCACATTTAACTATCCACACAGGAGAAAAGGCTCATTCGTGCTGGTTCAAGGATCTGAACGAGTTCGTTGCGCAGACTATGGGTAGCACACAATATGCCAACAGTTCCAACAGTCTATCAAAACTCGGCAAAACTTGCGAGTATTGTGGCATAAAACAATCGGATGACCTTTATACGGATCACTTGATCACCATGCATTCGGAATCACTATTCCATTGTAATGAGTGCGACACATATTTGGACAGAAAAGACTTCATTCTTCACATGTCTATACATGTTCAGTACGTAGCTAATAGTGACAAAAAGGAAGCTTTGAAAAAACTGAGAAAAAGGAAAAGCAACAAAGATAAAAACGAAAATGCAGTGATTACTACCTTGAAATCAAATCCATCTCAGAACAAGGAAACTGTAGAAAAGACAATCAAGAATTGTCCAAGAGAAAATAGCAACAATGAAACGCCAGAAAACGAATTTTCAGACCACAGTGATGTAGAATACTTTGGACGTCTACCCGAATCAGTGTTCGAAGCTATTGAAGACTCACAAGATAGCCAATGCGATAATGATCCGGAACTACCGCAGACTTCAGAAAATAATGAACTAAACGAAAATAACGATAACAGTGACATATCTAACGAATGTATTAAAATTTCTAAAGATTTAACTCCAACTGCTCGACCTGCATCAGATAGTAAAACTGAAAAAAGGCACAAAAAAACACGGACTTGTCCCATTTGCTCAAAAGTGTACACAGCCTCATCTAGCTACTTTTATCATTTGAAAAATTCTCACCAACAAAGTAAAGACTACGAATGCGACGTATGCGGTAAAAGGCTAGGAAATAAAAGTAGTTTAGCGCAGCACGCCTCCATACACGTGAGTGAGCGTCGCTTGGAGTGTAGGCAGTGCGGAAAAAAATTCCGTTCAAAAGCTAGTTTGTACATCCACGAGCAAATTCACAGCAACGTGAAGACTTGGGCCTGTAACCAATGCAACAGATCGTTTAGGTGGCGTACGCACTTGTTAAGACACTTAAAACGCCATTCAGCTGAGAAATCGCATATTTGCACGTCATGTGGGCGGGGCTTTAAAATCCATTGTGACTTGTTGCGACACGCCCGCACTCACACCGCTGGTAATTTTAGTTGCGAAAAATGCGGCGTCAAATTTGCGCAACACAGATATTTAAAAGTGCATATGATCAAGAAACATTCCAATAAAATAACTGGAAATGAATCTCAAAACTAG
- Protein Sequence
- MNNSTEQIFLVNSPGNQSVIGPLKISENTTSQVNLENVENFSNVCRTCATITEFVIPIFMGEGLQNNLAEKIHKHLPIQVSEQDVLPRVVCYQCASTLLAWHELVQCCVQADKALKTRLAVMQHKQKSSKHEARGNLHKESQAKSRKSVCVSSIKKVLIEYFKLSDEDLDHSGLEIICEKCNNESSFQTLQSFVEHLKLQHNFEITDKKSVENFIKEYVSIVEMLVAEDQIADLESEKGMVDIKIPRFYCPFCESAFSSTTRLFCHLNQHVDVCIEEGVTCCDNVYKDTKSFAVHLQEQHVNHPPNAANICQSCGFIAEDSQHLQSHVSKEHYVEKFDVNYVKERLENHDRWTPSRVNFDAYLSRVEAKTELKNNTIKVQNFNAVSAVDETVEMDDGSDDDQPLATIATKKSTDLYKKFYDALVSFRNHFVTEHKETKCEYPDFTDSSDSEEIMDDQSEDEDKNVNKFDDLTKCNMRIDKMNDETRLELNEVQRKINGKVFFTCKICDKNLSSAHTYIFHKRIHTGERPCVCHICGKQFRAPNGLQRHLTETHERLRRYACSFCPKNFANTQNLKQHIRIHTGERPFVCTHCGKRFTQSGSLHVHLKTHSEQFPFHCAECGAKFRLRAGLTRHRLKHSGERPHVCVQCGKGFRHKHDLFSHALSHTDPKPHTCSVCNAAFRQKRALKHHYKRVHENEPPREVVNHLVFNNLGQYHPILNECEVKVERSSEFESDSTHVEKQKDITETINKSLTIVNEDGKKYAHCGICEKNVSVGSWKRHVRSHVGEKRYSCHTCGLSFNDSGNLARHRRALHAKHRPFSCHICNKAFTRSSHLQDHVKSHSQSRDYVCDICGKASKSGAALRMHKKIHEDQFKFQCMECDSKFKRRGELKAHLTIHTGEKAHSCWFKDLNEFVAQTMGSTQYANSSNSLSKLGKTCEYCGIKQSDDLYTDHLITMHSESLFHCNECDTYLDRKDFILHMSIHVQYVANSDKKEALKKLRKRKSNKDKNENAVITTLKSNPSQNKETVEKTIKNCPRENSNNETPENEFSDHSDVEYFGRLPESVFEAIEDSQDSQCDNDPELPQTSENNELNENNDNSDISNECIKISKDLTPTARPASDSKTEKRHKKTRTCPICSKVYTASSSYFYHLKNSHQQSKDYECDVCGKRLGNKSSLAQHASIHVSERRLECRQCGKKFRSKASLYIHEQIHSNVKTWACNQCNRSFRWRTHLLRHLKRHSAEKSHICTSCGRGFKIHCDLLRHARTHTAGNFSCEKCGVKFAQHRYLKVHMIKKHSNKITGNESQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -