Papo027216.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001624.1:2224860-2236524[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.04 4 8.7 0.1 1 23 52 75 52 75 0.95 2 35 0.042 4.2 8.6 0.2 2 23 100 122 99 122 0.96 3 35 0.047 4.8 8.5 2.4 2 23 145 166 144 166 0.96 4 35 0.27 28 6.1 0.1 1 23 170 192 170 192 0.93 5 35 1.5 1.5e+02 3.8 2.4 1 19 197 215 197 217 0.87 6 35 0.075 7.6 7.8 1.9 2 23 228 250 227 250 0.90 7 35 0.00026 0.027 15.6 1.1 2 23 258 280 257 280 0.96 8 35 0.00053 0.054 14.6 2.1 1 23 286 308 286 308 0.98 9 35 9.9e-06 0.001 20.0 3.6 1 23 314 336 314 336 0.99 10 35 0.6 61 5.0 0.6 1 23 412 435 412 435 0.89 11 35 0.33 34 5.8 1.0 2 23 462 484 461 484 0.95 12 35 9.5e-05 0.0096 17.0 0.8 2 23 507 528 506 528 0.96 13 35 0.072 7.3 7.9 2.1 1 23 532 554 532 554 0.97 14 35 0.0024 0.24 12.6 1.4 1 23 559 582 559 582 0.92 15 35 0.00075 0.076 14.1 0.7 2 23 590 612 589 612 0.94 16 35 8.2e-05 0.0084 17.2 1.3 2 23 620 642 619 642 0.96 17 35 0.017 1.8 9.8 2.1 1 23 648 670 648 670 0.90 18 35 1.2e-05 0.0013 19.7 0.6 1 23 676 698 676 698 0.98 19 35 0.84 85 4.5 1.1 1 23 790 813 790 813 0.90 20 35 0.0087 0.89 10.8 0.2 2 23 840 862 839 862 0.95 21 35 2.8 2.8e+02 2.9 5.8 2 23 885 906 884 906 0.96 22 35 0.18 18 6.7 0.9 1 19 910 928 910 932 0.87 23 35 0.02 2 9.6 0.7 1 23 937 960 937 960 0.95 24 35 0.026 2.6 9.3 1.5 1 23 966 989 966 989 0.95 25 35 0.0059 0.6 11.3 0.8 2 23 997 1019 996 1019 0.96 26 35 0.0013 0.13 13.4 0.3 3 23 1095 1116 1093 1116 0.91 27 35 3 3e+02 2.8 1.8 3 23 1143 1164 1140 1164 0.92 28 35 0.00027 0.027 15.5 0.4 2 23 1187 1208 1186 1208 0.97 29 35 0.0019 0.19 12.9 0.0 1 23 1212 1234 1212 1234 0.98 30 35 0.038 3.8 8.8 7.0 1 23 1239 1262 1239 1262 0.94 31 35 3.5 3.6e+02 2.6 0.4 2 23 1270 1292 1269 1292 0.78 32 35 0.0014 0.14 13.3 1.8 2 23 1300 1322 1299 1322 0.96 33 35 0.0025 0.26 12.5 5.8 1 23 1328 1350 1328 1350 0.96 34 35 7.2e-06 0.00073 20.5 2.4 1 23 1356 1378 1356 1378 0.98 35 35 0.00032 0.033 15.3 4.4 1 23 1384 1407 1384 1407 0.98
Sequence Information
- Coding Sequence
- ATGACAAATGAAAACAAAAAGGAACAAGGCGAAAAGACTGACACgaaaaaaaaagttaagaaaGGCAAAGAACTGTTGAAACATCGAATGAACGTGTGGGAAATTCTTGCTAATTCCAATGCGACACCTATACGGTGTCATGGCGGCATTGGGTACGCTTGTAGCTTCTGCGAGGACCAGTATCCAGACCCTGCCAATCTCAAAAAGCACACAATCGTCTCCCACCCTAATGTGACTATATTCATGAAAGGGATGGACTTGCACAGGTTTTACGTCAAGCTGGACATAACCGACTTAAGATGCAAAGTTTGCGATAGCAGCATCGACAACTTGGAGCAGCTCATCGATCATTTGAGGAATACGCACAACAAAAATTTCCACACTGATATTAAAAACCAAATATTACCGTTTAAATTTGACAGCGAGACTTTGCGCTGTTTTCTCTGCAGCAACAAGTTCAACAAATTCAAAACTCTTCAAGAGCATATGAATATACACTATCGTAATTTCATTTGTGAAGTGTGCGACGCCGGTTTCGTGACGCGTGGCATTTTGTTCCAGCATTCCGAGAGACATAAGCTCGGATCATTCAAATGCGACTTCTGCTCAAAGGAGTTCGACACGATGCGGAAGAAAAAGTCCCACGAGAAGTGCATTCACATACACTCCAACATGCTCAACAAATGCGGTTACTGTAACGAAAAGTTTAGGGACTACCGGAAGAAGCAGAAACATCTGGTGGAAACGCACGGTGTGCCATCACAAACTCTGAAATGTGACGCTTGTAATAAGACGTTTGCCGGACAGAAGCATCTAAGCGTTCACATCAAGCGAGTACACTTGGTAGAACGCCGGCATCGGTGCACGGAATGTGAAATGACGTTCTTCTCTTCAGGGGAAATGAAGATTCACATGTTGAAGCATACGGGTGTGCGCGATTTCAAATGTTCCGTCTGTCATAAATCGTATGGGAGGAGGCGGACGTTGCAAGAACATATGCGCATCCATGCGGACGACAGACGGTTCAAGTGTAATTCAAGATCTATATTAGAAACAGAAGAAAGAAAAGAACGTGATAGTATTTTAATTGAAACAAAAAAGAATGTAGAAAAACAAGCTATAAAAGAATCGCTTGTTAAAAAGTGGAAAGAAATTGAAAAGCATCGAGCTAATGTACACCAGATTTTAAGTAATTCCAACGCTACGCCGATCAGATGTCGAGGTAGCGTTGGTTACGCTTGTTGCTTCTGCAATGGTCAATATCCTAATCCAGCGGATCTAAAACAGCACAGTATAGAAAACCACGAGAATATCAACGAAACTAAATACATGAAACGCAAGGACATGCACAATTTCAACATGAAAATAGACATCACAGGCTTATGTTGTAAACTGTGCGATAGAAAAATTGATACAATTGAGCTGCTAttggaacatttaaaaaaagtacacCAGAAAAAAGTGTTCACTGATATTAAGGTTCAACTGATaccgtttaaatttgaaaatgatatCCTTAAGTGCTATATTTGTGGCAAAATCTTTCCGAAATTCCAAACTCTTCGACAGCATATGAACGAACACTACAGTAATTATAAATGCAATGAGTGCGATGCGGGCTTCGTGTGTCAGTCTATGCTTCACGAGCATTCTCAGATCCACAAACTAGGCACGTTCAAATGTGATATCTGTCCGAAAGTTTTCAGTACGTTCCGAAAGAAAAGAAGCCACGAGAAGGGCGTTCATTCGCAAGTCGAACTGAAAAATAAATGTCCGTACTGCGACGAAAAATTTAAGTACTACAGGCAGAAGGAGAGGCATATGGCCGAAGCTCACGAGAAAGCCTTTCCGCCACTAAAATGCAAAGCCTGTGAGAAGTCATTTTATACCCAAAGCAGTTTAAGCATACACCTGAAAAGATTGCACTTGGTTCACAGACCCCACAAATGTCCGAACTGTGATAAACATTTCTATTCTATGGCAGAGGTCCGACTACACTTACCGACCCATACCGGGCTTCGTACATTCGAATGCGACATCTGTCGTAAAACGTTCGGCGTGAGAAAAACACTTAACGAACACATGCGTATACATATGAACGATAAGCGACATAAATGTTTACCGCGTACCAAAATCACTAAGCTCATAAGTCGAACCGAATCTGAAACAAAATTCGCGGACGAGAAGAGcgagtgcaaaaaatcttgtagAAAAAGGAAATCATTAGATGCTAAGAAAAATTCTAAAATGGAACCTGATGAACCTCGAACAAAACACGGTGAAGAATTAGAAAAACATCGTACGAACGTGAGAGAAATATTGTTATGGTCTAATGCTACTCCAATCAGATGTAGAGGTGGCATTGGTTACGCTTGCTGCTTCTGTAATGATCAATATCCAAACCCAAATGATTTGAAAAGACATTCCTTAGAGGAACACGATAGCATTGTTATATCCACGTTTATGAAAGGGAGAGATATGCACGGATACTTCGTTAAGCTAGACATAACGGCACTAACTTGCAAAATTTGTAATACATCCATCGACACATTGGAACAATTGATGGAACATCTAAAGAACGTGCACAATAAAAATGTTGATCTGAGTATAAAAAATCACATGATACCGTTCAAGTTTGAAACAGAGAATCTTCGTTGCTGCATTTGCTTGAACGTTTTCCACAAATTCCATGCACTGCAGGTCCACATGAACAACCATTGCAGGAATTACATCTGCGATATCTGCGACGCGGGATTTGTGAATAGACATATGCTGCGATGCCACAGTGACGGGCACAAGGTAGGGACTTTCGCCTGTGAACAGTGCTCCAAAGTGTTTAAAACAATTCGCATGAAGAAACTGCACGAACGGATCGTCCATAATTCAAATATGCCGCACAAATGTGGCTACTGCAGCGAACGGTTCAAGGAGAACTGGAATAAGAATGAACATCTGGCTAGAGTACACGGAGTACGCGGCCCGGGAGTGAAATGCCAAGCCTGCGATAAAACATTCGACACTCAGCAGAGATGGTTGCTTCACATGAAACGAGATCACTTAATGCAAAGGCAGCACAAGTGCAATAGATGTGTGGGAAGAGTAATCAAAATAGAAACAAGGCATACAAAACCGGTGGAATTGAAGTTTATATCAAAAAGTAAGACAACAGTGAGAAGTAACAGTGACCTCTCTGAGGCGAAGAAAAACCAGCACAATTTGAGCATCATCCTACTGAATTCAAACGCGAATCCAATCCGATGCAAAGACAGCTTTGGATATGGCTGCGCTTTCTGTCCGAAACAATTCCCACAGCCGACTAATTTAAAGAAACACTTCTTAGAAGAACACAATAGTGATAGACTCATCAAATATATGTCGAGTAAGCTTTTTGAAAATGTTGTTAAACTCGACATCACGTACTTGTGCTGTGCGCTCTGTGATACGGATTTCTTACAACTCGACGATTTCGTTCACCATTTAAAAAACGGACACGACAAAGACCTTTACATTGATATCAAAAGCCAAATCCTGCCCTTCAGGTTCGATACGCCGGAACTAAAATGCGCTATTTGTTCAACTGAATTTGCTACATTCAAACTGTTACAGGAACACATGAATACACATTTTAGGAATTATCCCTGCGAAATATGTGGAGGAAGCTACGTGACAGAAAGACTACTGCAAGGCCATGTTAAGCGTCACGGCAATGGCGAATACAAATGCACCCAATGCGATAAAACTTTCACAAGCGAACACAAGCGACGCGAGCACGAGCACAGAACCCACCTTGGGTTTAACAAGCGAAATAAATGCCAGATTTGCAACGAGAGGTTCCTTGATTACTGGAAGAAAATCGATCACATGGTGAAAGTACACGGTGCGCCACCAGTTGTACTCAAATGTCAAGCCTGCGAGCGAACTTTTAATAATCAGAGGGCTTTGTCGAGACACAAGAAGAAGGACcatttactggaaaggaggcacaACTGTTCGGAGTGCGAGATGAAATTTTTCAGCAGCAGCTGTTTGCAAAAGCACATGGCAAAGCACACGGGGCTGAGGGAATATATGTGCGACGTGTGCCACAAGTCATATGGCAGGAAGAACACCTTGAGGGAGCACATGCGGATTCATGCTGATGATCGTCGTTTCAAATGCGAACATTGCGGTCAAGGATTTGTGCAGAAATGCAGCTGGCGCGGCCACATGCGCTCTAAACATGGCGAGAATGTTTAA
- Protein Sequence
- MTNENKKEQGEKTDTKKKVKKGKELLKHRMNVWEILANSNATPIRCHGGIGYACSFCEDQYPDPANLKKHTIVSHPNVTIFMKGMDLHRFYVKLDITDLRCKVCDSSIDNLEQLIDHLRNTHNKNFHTDIKNQILPFKFDSETLRCFLCSNKFNKFKTLQEHMNIHYRNFICEVCDAGFVTRGILFQHSERHKLGSFKCDFCSKEFDTMRKKKSHEKCIHIHSNMLNKCGYCNEKFRDYRKKQKHLVETHGVPSQTLKCDACNKTFAGQKHLSVHIKRVHLVERRHRCTECEMTFFSSGEMKIHMLKHTGVRDFKCSVCHKSYGRRRTLQEHMRIHADDRRFKCNSRSILETEERKERDSILIETKKNVEKQAIKESLVKKWKEIEKHRANVHQILSNSNATPIRCRGSVGYACCFCNGQYPNPADLKQHSIENHENINETKYMKRKDMHNFNMKIDITGLCCKLCDRKIDTIELLLEHLKKVHQKKVFTDIKVQLIPFKFENDILKCYICGKIFPKFQTLRQHMNEHYSNYKCNECDAGFVCQSMLHEHSQIHKLGTFKCDICPKVFSTFRKKRSHEKGVHSQVELKNKCPYCDEKFKYYRQKERHMAEAHEKAFPPLKCKACEKSFYTQSSLSIHLKRLHLVHRPHKCPNCDKHFYSMAEVRLHLPTHTGLRTFECDICRKTFGVRKTLNEHMRIHMNDKRHKCLPRTKITKLISRTESETKFADEKSECKKSCRKRKSLDAKKNSKMEPDEPRTKHGEELEKHRTNVREILLWSNATPIRCRGGIGYACCFCNDQYPNPNDLKRHSLEEHDSIVISTFMKGRDMHGYFVKLDITALTCKICNTSIDTLEQLMEHLKNVHNKNVDLSIKNHMIPFKFETENLRCCICLNVFHKFHALQVHMNNHCRNYICDICDAGFVNRHMLRCHSDGHKVGTFACEQCSKVFKTIRMKKLHERIVHNSNMPHKCGYCSERFKENWNKNEHLARVHGVRGPGVKCQACDKTFDTQQRWLLHMKRDHLMQRQHKCNRCVGRVIKIETRHTKPVELKFISKSKTTVRSNSDLSEAKKNQHNLSIILLNSNANPIRCKDSFGYGCAFCPKQFPQPTNLKKHFLEEHNSDRLIKYMSSKLFENVVKLDITYLCCALCDTDFLQLDDFVHHLKNGHDKDLYIDIKSQILPFRFDTPELKCAICSTEFATFKLLQEHMNTHFRNYPCEICGGSYVTERLLQGHVKRHGNGEYKCTQCDKTFTSEHKRREHEHRTHLGFNKRNKCQICNERFLDYWKKIDHMVKVHGAPPVVLKCQACERTFNNQRALSRHKKKDHLLERRHNCSECEMKFFSSSCLQKHMAKHTGLREYMCDVCHKSYGRKNTLREHMRIHADDRRFKCEHCGQGFVQKCSWRGHMRSKHGENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -