Basic Information

Insect: Parnassius apollo
Gene Symbol: Msh6_1
Assembly: GCA_907164705.1
Location: CAJQZP010001501.1:211465-247121[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.7e-06 0.00029 21.1 0.0 9 40 1155 1187 1149 1190 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.7e-06	0.00029	21.1	0.0	9	40	1155	1187	1149	1190	0.88

Sequence Information

Coding Sequence: ATGTCAAAGCGTAATAGTGTCGGAAATACTTTGTTCAATTATTTCACTAAAACTCCACCcagcaacaaaaaattaaaatcaaataatattggTTCTGATGCTATTTCTAACCAAAATTTGTTTAATagtaacaaagatttaaaaattgaAAacAATAAGCGCGAAAGACAAACGACTCCTTCGCCTGAGGAAAATAAAACCCATGACGAAAGTGATGATGATGTTCTTGTTGCTTCTAAGAAGAGGAAAAGGATACGTCTTAATCCAGTGGATTCCGACGATTCTGACATCGAGAATAGAGATGTCAAAACACAGCCTAAGGATACTTTACAAAAAAGGTTGCAGGACAGCTTTAAATATGACCCTAATGAATCCCTTACAAGTAGCAAAGAAAAGAAAACTTCTATTGATGGATCATCTAAAAATCAATCAAAGCCATTAGAACAACAAGAGACAGCAGTAATAGCTGATGATGGCGATTGGGCTCATTGCAAACTGGATTGGTTAAAACCAGACAAGATTCGAGATGCCAAGAAGAGAAGACCAGATCACCCTGACTATGACCCCACCACACTATATGTACCAACTGATTATTACAACAGTCAAACTCCAggtcATAAGCAGTGGTGGGATATGAAATCGGCTCATTTTgattgtgttttgtttttcaaaGTTGGCAAGTTCTATGAACTCTACCATATGGATGCAGCAGTTGGCGTGAATGAACTAGGGTTTTCTTATATGAAGGGTCAGTTTGCACATTCGGGTTTCCCTGAGAGTGCGTACGGGCGCATGGCTTCTACTTTAGTGTCAAAAGGATATAAAGTCGCCCGTGTTGAGCAGACTGAAACACCAGAAATGATGCAGGAGAGGTGTAAAAAATATGGGCAAACAAGCAAAGCGGATAAGGTAGTGAGACGCGAAATTTGTCAGGTGTCAGTCCGTGGTGCACAAGTGTATGGTCTGCAAGACCCAGGGCCAGCTGATGCTGCTGCTGTCTATTTATTGGCTATTGCTGAAGAGgAAAGCAATGGATGCAGCACATACGGTGTCTGCTTCGTGGACACGTCCATAGGACAGTTTCATGTTGGACAGTTCCATGATGACAAACACTCTTCAAGGTTGCTGACGACCATTGCGCATTTCCCGCCTGCTTTGTTAGTGTTTGATCGCAAGCACACAACATCACATACTTCCAAACTACTGACGACCCACTGCCATAACGCACGTAGGGAACCTTTATCAATGTGGACACCAGAAAAGACGTTAAAGATATTGGCCGAGAAGTACTATAAAACCAATGCCGATGGCGACTGGCCTGCAGGATTGAAAATGTTCTTACATGAAGGTGATGCTTTAGGTCTCACCCCAGCTGCGAACTCCTACTTAGCTATTAAAGCATTAGGAGGTTGTGTTGCATTTTTAACCGATTGCTTACTTGACATACAAATATTGGACATGGCTCATTTTACTTCCTACTCTCCACCTGATGTCATCAATAGAACCCTATCGCCAGAGCTGAAGGCTCAAAATCAGTGGCGAGGCGGGAATATCATGGTGCTTGACGCAATCACGCTGCGGAATCTGAGGATTGTGCAAGATGATGGTTGCTTGTACGACAAATTGAATTTCTGCTCTACTGCTATGGGTAAAAGGTTACTATACCAGTGGGTGTGTTCACCGAGTTGCAGTCTTACAGTGATAAAAGAGCGCCAGGAAGCTGTTAAGATGTTACTGGAAAATCAGGAGCTGTGTCAGGATGCCAAAAACATATTGACGACGCTTCCGGATCTGGAAAGGCTATTGGCCAAGGTCCATGCCTTGGGAAATCTAAAGAGAGCTCAAAATCATCCAGATGCGCGTGCGATTTTTTATGAAGAGAAAACATATTCAAAGCGGAAAGTTCTGGATTTTATCTCAGTACTGCAAGGTTTCACCGCTGTTTTGAAACTCGTCGACTTGTTCTCTGATGTCGAGTCTCAGCTATTGAAAGGCGTAACTCAATTCCAGCCGGAAGGAAAATTCCCAGACTATAAAGACACTTTGAAGTTCTTTAAGGAAGCATTTAATCAGCAAGAGGCTGAGAAGGAAGGTCGCATACTGCCAGGGCAGGGAGTCGACCAAGAGTATGACAGTGCGCTGCAGACAATACAGCAGATTGAAGACGAATTAAAGGAATACCTTGTTGAACaggagaaatattttaaatgtcgATTAAAATACGTGGGTACAGACAAAAAACGGTATCAATTAGAAGTGCCACACGGCAATGCTTCTAAAGCTGGCTCTGAATATCACTTGGAAGGAGCACGGAAAGGATTTAAAAGGTTTTCAACCACAGAGACTAAGGACTTCCTATCTCGAATGATCGCTGCCGAAGAACAAAAAACCAAAGTGCTGAAGGACCTTAATCGTCGTATATTCGAGAAGTTTTCTTCGCACCGCAACCAGTGGGAGGCGGCGGTACAATGCATCTCCACTCTCGACATATTGCTGTCTTTCGCAGAGTTCGCAAGACAACAAAACGGCGATATTTGTCTACCGGAGATAACTTTTGATAAAACCAAAAAGCCATATATTGAAATAGTAGAAGGACGTCATCCATGCATTCCAATAGTGAACGATTTTATTCCAAACGACACTGAGTTGGGTGTAGAGGGCGCCAGCTTGCTGCTGCTCACCGGACCCAATATGGGCGGCAAGTCCACTCTCATGCGCCAAGTTGGACTTCTCACCGTTCTTGCACATTTGGGTAGCTACGTACCAGCGCAAGAATGCAGCCTAAGTCTCGTGGATCGCATATTCACGCGGCTCGGCGCATCAGATGACATCTTGTCTGGACAGTCTACCTTCTTAGTTGAAATGAACGAAACTGCTGCTATTGTTAAGCACGCTACAGTGCATTCGTTGGTATTACTAGATGAGTTagGTCGGGGTACGTCGACTTACGACGGTACGGCGATAGCGTCGGCCGTGTGCGTAGAATTGGCGGCACGCGAGTGTCGGGCGGTGTTCAGCACGCACTACCACTCGCTGGTACAGTACCTGGCCGCGCAGCCTGGCGTCCAGCTCGGCCACATGGCGTGTATGGTTGAAACGGACGAATCAACAGTGGACTGCGAAGATGATATACCTGAAGAAACGATTACCTTCCTGTACAAGTTAACTCCTGGAGCTTGTCCAAAGTCCTACGGCTTTAACGCTGCTCGCCTAGCAGGAATACCCCGAGAGATCACCAAGAGAGCTCAACTTATATCCAGGAACTTGGAGAAAGAAGCCACATGTGTTAGAGCATTCAGAAGTATAATTAAAATGGAGGgCATGTATGTAAGAGTGTGGCAATTGTTTTTTAAAGACGATTTACTTATGTGTTGGGATTTAATGGCAGATCTAGAAAATCGAATTAAAACACAGAGCGACATTCCTGATACCATCCGTGTACAGACGAAAGTAAAAAAATGTCTGGATGCAATCCAATCCAAAGTGCTCACACAAAGAGCGGCTGCAGAGTTATTTAACATTCCTCGCAGCACTTTGAAAAACAAATTAACCCGGAAGCATCTTGACAAACCAGATAAACCTACAATTTTTACTGAAGAGGAAGAAAAGGCGTTTGAAGCTCACATAACTGCACTTTCGGAATATGAGTTTCCGCTGACAGCATTCGACCTAAAAATGATAATCAAAAATTACCTTGAATCCCAGGGAAGAgttgtaaaaaattttaaaaacaacattCCTGGTAAAGACTGGTTGGCTTCTTTTCTTTCACGAAATCAATCTCTTTCACGGCCACTTGCTAACAATATCAAAAGAGTCCGCCGAGCTCAAGTGTCGGAAGAtgtcatttctaattttatagaaAACTACGACAAAGAACTAGAAAGCGTTCCACCCGAAAACATATTCAACTACGATGAAAGCAACCTTTGTGATGACCCAGGAAAAAAGACATATTGTGCAGAAGAGGAACAAAATATCCGGAAACAAAGTATTGCTTCAATGGAAGAACAGTCATCTGGAAAGACAGGCATATACTCCATTGACAAAGGGGAGCCTTTAGCTAGATTACCCAAACAAGATCGTATAATAAACGCAGGTCTTATAGGGAACTCTTTTATGCATAAATTGGTGCAGTACCGAGCTGAGGCGTGCCCAGAACAGAAAACAATTAGGAAAAAGAAACTTAATGTACCACCTGGAAAATCAATCTGTGCCACTGACCTTGCAGAAGCAGGTCTATCAGGTTTACAGCACGCTAAAACTATAAAGGAAAAGAAAAGGGCAACAAAACGAGGACAACATAACGTCTCTTCATCTTCAAGCTGCAGTGACAGGACCATCAGTCTAGCTTCTTCCACTGAAGACCACATAATGCCTCATGACTCTGAGGATGATGTTCTTCTGGCCAACTATGTGTCAGATTAG
Protein Sequence: MSKRNSVGNTLFNYFTKTPPSNKKLKSNNIGSDAISNQNLFNSNKDLKIENNKRERQTTPSPEENKTHDESDDDVLVASKKRKRIRLNPVDSDDSDIENRDVKTQPKDTLQKRLQDSFKYDPNESLTSSKEKKTSIDGSSKNQSKPLEQQETAVIADDGDWAHCKLDWLKPDKIRDAKKRRPDHPDYDPTTLYVPTDYYNSQTPGHKQWWDMKSAHFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGQFAHSGFPESAYGRMASTLVSKGYKVARVEQTETPEMMQERCKKYGQTSKADKVVRREICQVSVRGAQVYGLQDPGPADAAAVYLLAIAEEESNGCSTYGVCFVDTSIGQFHVGQFHDDKHSSRLLTTIAHFPPALLVFDRKHTTSHTSKLLTTHCHNARREPLSMWTPEKTLKILAEKYYKTNADGDWPAGLKMFLHEGDALGLTPAANSYLAIKALGGCVAFLTDCLLDIQILDMAHFTSYSPPDVINRTLSPELKAQNQWRGGNIMVLDAITLRNLRIVQDDGCLYDKLNFCSTAMGKRLLYQWVCSPSCSLTVIKERQEAVKMLLENQELCQDAKNILTTLPDLERLLAKVHALGNLKRAQNHPDARAIFYEEKTYSKRKVLDFISVLQGFTAVLKLVDLFSDVESQLLKGVTQFQPEGKFPDYKDTLKFFKEAFNQQEAEKEGRILPGQGVDQEYDSALQTIQQIEDELKEYLVEQEKYFKCRLKYVGTDKKRYQLEVPHGNASKAGSEYHLEGARKGFKRFSTTETKDFLSRMIAAEEQKTKVLKDLNRRIFEKFSSHRNQWEAAVQCISTLDILLSFAEFARQQNGDICLPEITFDKTKKPYIEIVEGRHPCIPIVNDFIPNDTELGVEGASLLLLTGPNMGGKSTLMRQVGLLTVLAHLGSYVPAQECSLSLVDRIFTRLGASDDILSGQSTFLVEMNETAAIVKHATVHSLVLLDELGRGTSTYDGTAIASAVCVELAARECRAVFSTHYHSLVQYLAAQPGVQLGHMACMVETDESTVDCEDDIPEETITFLYKLTPGACPKSYGFNAARLAGIPREITKRAQLISRNLEKEATCVRAFRSIIKMEGMYVRVWQLFFKDDLLMCWDLMADLENRIKTQSDIPDTIRVQTKVKKCLDAIQSKVLTQRAAAELFNIPRSTLKNKLTRKHLDKPDKPTIFTEEEEKAFEAHITALSEYEFPLTAFDLKMIIKNYLESQGRVVKNFKNNIPGKDWLASFLSRNQSLSRPLANNIKRVRRAQVSEDVISNFIENYDKELESVPPENIFNYDESNLCDDPGKKTYCAEEEQNIRKQSIASMEEQSSGKTGIYSIDKGEPLARLPKQDRIINAGLIGNSFMHKLVQYRAEACPEQKTIRKKKLNVPPGKSICATDLAEAGLSGLQHAKTIKEKKRATKRGQHNVSSSSSCSDRTISLASSTEDHIMPHDSEDDVLLANYVSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -