Papo021580.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001331.1:6169395-6171173[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.8e-07 0.00017 21.8 0.0 5 40 14 49 11 53 0.83
Sequence Information
- Coding Sequence
- ATGAAGGGCGAGAAACGCAGAAATTATGACTCTTCACGCTTCAAGGAGGCTTATATGAAAGTTATAAAGGATAATTGGTCCGTGTACAAGGCGTCGAAGGAATATGGCATACCGTGGTCTACTTTGAGAAGACACATAGCTACTCATGGAGGTGAAAGTTTCGACTTACCTAAACTTGGGAGACCATTCACATTAGACAGCGACCTTGAATGTAAGTTTGTTTCCTacataattaaaatgcaagaactAGGATTTGGTCTCAGCGTCACAGACATCAAAGCTAAATGTTACGCTTTAGCAGTCCAAGCAGGAAAAGATCACCAGTTTAACGATGCTAAACGTAAAGCTGGGGCTTATTGGTGGTGGTCGTTTAAAGAACGGTACGGGCTTTCATTGCGCACGCCAGAAAAGCTTGCAGCATGCCGAGCTGTTACTGCTAACAGACAAAACATTGACGATTTTTATAAAAAGCTACTGGACGTCGTTATTGAGCTGGATATTCTGCAAAAGCCTGAAAGGATTTATAACTGCGACGAAACCGGTGTAACGTTCGTCGTAAAACCGTCAAAAATTGTCACTCAAACTGGAAAGAAGGTAATTTACAGTAGAACTTTTGCAGAGAAAGGTGTCACACAAACGGTGCTTGGGTGCTGTAGTGCGAGCGGAGCGTCTGTACCCCCCTTGATCATTTTTAAAGGTGTCCGAATGGTCAATGATCTAGCGAATGGTGCTCCGGAAGGGTCTATCGTGAGATTATCCAAAAACGGATGGATTAACTCTGAACTATTTCTGGAGTGGATGCATCATTTTGAAGCTCATATTCCCCCAGCTAGACCGGTACTTTTAATCATGGATTCTCACTCTACCCATGTCAGCCAAGATGTTATAGATTTCGCTACAAAAAATGGCATTCATCTATTCACTTTTCCAAGTCACACAAGCCATCTCCTGCAACCTCTGGACGTTTCCGTTTACAAGTCACTGAAAAATGCATGGGCTAAAGTGCTAAATGATTATAAGCTTCAACATCCAACGAGTGCTCCAACAAGACTTGACTTTTGTCGCCTATTAACACCAGCCTACGAGCAAGCATTTCAGCCGTCAATAATTATGAACGGCTTTCGAAAAACTGGCATTGCGCCATTTGATCGAAATGCCATTTCTGATGAAAGTATTGCCCCATCATTGATGCAGCCAAGTGACCTACAGTCACAGAATATTGAATCTTCCACTGATAATGCCCAAGCTTCTGCTGTCAATCGTGAAACTGCGTCACCTTCAGTTTTCTCTTTACTTTCCGTTCCTGAGGTACCACAGTCTTCTTCTTCTAGTACCCGACGAGCTAAGCGGAATCCACAGGCCCGATATTTAACACCTCAAAGCACGAACAACATGGACAGTCCTGAAGAAAACATCGTCGCCATATCAAACGAAACCACAGTCGCCGTTACCAGTGAGGAGACCGTTACCTCGATTCATGTCCCCTCTGCTCCTCCAACTCCTGGACCTTCAACTGAAAGCAACCTGAAGCGTAAACTACCAAGAGTCAAGGTAGAGAAAACACCTAAATCAAATAAAAGTACGATGTGTGACTATTGCGGTGTTCACTACTCCCAAGATGTGGCACTTAGGAACGGAGCTGTATGGGTAGAGTGCATGAGCTGCGGCAAATGGTACCACCAAGAATGTACTGGCACAGAGTCGCCACAGTTCCTGTGTGATAATTGTGATAAAGTAGACTTTTCAGGCACTGATGACAGTGATTGGGCACCTGAATAG
- Protein Sequence
- MKGEKRRNYDSSRFKEAYMKVIKDNWSVYKASKEYGIPWSTLRRHIATHGGESFDLPKLGRPFTLDSDLECKFVSYIIKMQELGFGLSVTDIKAKCYALAVQAGKDHQFNDAKRKAGAYWWWSFKERYGLSLRTPEKLAACRAVTANRQNIDDFYKKLLDVVIELDILQKPERIYNCDETGVTFVVKPSKIVTQTGKKVIYSRTFAEKGVTQTVLGCCSASGASVPPLIIFKGVRMVNDLANGAPEGSIVRLSKNGWINSELFLEWMHHFEAHIPPARPVLLIMDSHSTHVSQDVIDFATKNGIHLFTFPSHTSHLLQPLDVSVYKSLKNAWAKVLNDYKLQHPTSAPTRLDFCRLLTPAYEQAFQPSIIMNGFRKTGIAPFDRNAISDESIAPSLMQPSDLQSQNIESSTDNAQASAVNRETASPSVFSLLSVPEVPQSSSSSTRRAKRNPQARYLTPQSTNNMDSPEENIVAISNETTVAVTSEETVTSIHVPSAPPTPGPSTESNLKRKLPRVKVEKTPKSNKSTMCDYCGVHYSQDVALRNGAVWVECMSCGKWYHQECTGTESPQFLCDNCDKVDFSGTDDSDWAPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367784;
- 90% Identity
- iTF_00114892;
- 80% Identity
- -