Basic Information

Insect: Parnassius apollo
Gene Symbol: Fig4_1
Assembly: GCA_907164705.1
Location: CAJQZP010000610.1:3427147-3464346[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.7e-07 3e-05 24.3 0.3 2 44 779 819 778 820 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.7e-07	3e-05	24.3	0.3	2	44	779	819	778	820	0.87

Sequence Information

Coding Sequence: ATGTCcaaacaaaatattatgtttCATCCAATTATCAGTTCTATTCAACGAATAGCCCTATATGAAACTAAAGCGAGATTTTATCTCATTGGTTCAAATAACACCCAGACCAGATTTCGGGTACTAAAAATTGATAGAACGGATCCAAAAGAGCTAATTTTAGTTGATGATAAAGTAGAATATAACAAGCAAGAAATACACCAACTGTTAAATATGATTGGTTTTGGCAATAGAGGCAACAGATCACCTGGTTTCAACAAACTTGTTTCCGCTTTTGGAATAGTTGGCTTTATTAAATTCTTAGAAGGCTACTACATTATTTTAGTAACTAAGAGAAGAAAAATTGCAGTGATTGGTTCACATTCCATTTACAAAATTGAAGACACTGCTACAATATACATTCCTAGTGACAACACCAAGCCTCAACATCCAGATGaacaaagatatttaaaaatgttcCTAGCTATAGACTTGTCAACCAATTTTTATTATAGCTACAGTTATGACATAACCCACACATTACAAATGAACATGGCACCTCCAAGAAAATTAGCACCTGCATTGTTTCCCAAGCCTATCACTGCAGCAGTTTATCACTCAAATTTAAATTCAGACAATAGTGAAGAAAATAAATGCATTTGTCatgattgtgatgatgatgaagatatatTTGAGACTTGGAAGCAACAGTTACAGCAAAGGCTGAAAAAAACTGGggAACCAATTCCAAAACTAGAATTTGGTATAAGGACAGTGCCAGAGTGGAGATTTGTTTGGAATAGTCATTTACTCTCAGCGGTACACTCCTATCTTCATCCAGACTGGATATTATACATAGTACATGGATTTATAGAACAGAGCAACCTAAATATATTTGGTAGGCCAATTTACCTAACGCTCATAGCCAGAAGAAGTAACAGGTATGCTGGTACTAGATTCCTTAAAAGAGGTGCAAACTTACACGGTGATGTTGCTAATGAAGTTGAAACTGAGCAGATTGTTCATGACTCAATGATATCATCGTTTGCAGCTGGCagGTTTAGTTCGTTTGTCCAGATGCGGGGCTCTATTCCCAGTTATTGGTCGCAAGATATATCTAAAATGGTACCAAAACCAGCCATTTCAATTGATTTGGGTGACCCGTATGCTGAAATACCAGCAAAACATTTCAATAATCTAATGAGAAGATATGGTTCGCCGATTATGATCTTGAATTTAGTAAAAAAGAGAGAGAAGAAAAAGCATGAATCACTATTAACAGATGCAATTAGCAATGCAGTAAAGTACCTGAACCAATTTTTATCTCCCGAGCATGCTATACAGTACTTCCATTTGGATATGGCTAGAATGAATAAGGGAGCCGATGCAAAGGTTCTTGATAAACTGTCAGCAATAGCCCGCACAGTAGTCCGTAGAACAGGCATATTTCTAAGCTCCAAGGGCTATGATGATGAGACTGGTGTACCGGGGCATCAAAGCGGACGCCTTCAGACTGGAATAGTTCGAGTCAACTGCGTGGATTGTCTAGACAGGACAAACACCGCACAGTTTGCTATTGGCAAATGTGTGCTTGCACATCAGCTATATGCATTGGGCCTTATTGGTGAACCAGTTATAGAGTTCGACTCAGACTGCGTGAGATTACTAGAGGGATTGTATGAAGATCATGGAGATACTCTCGCATTACAATATGGTGGATCACAATTAGTTCACAgAATAAAAACCTATCGGAAAACAGCTCCCTGGTCGTCGCACGGCAATGATATTATGCAAACACTGAGCCGATATTACTCGAATACGTTTTCCGACGCGGAGAAACAGAATACAATGAATTTGTTCCTTGGACTCTTTGTTCCGGATGCGGGCAAGCCGGCCATTTGGGAATATCCTACTGATTATTACCTGCACCATCCTGAGGCGATAGTGTACATTCCAAATAAAAGGTCTTTAACAAAGTGGTGGGACGACGACGTCATACGGCATCTGCCGCTGCCGTGTAACGAGATGCGGAAGCTGTGCTGCGAGATCATCGGCACGCAGGGCGACGGCGCCTTAGAGATGTTAGACCCCTACCAAGAATATAACCGCCCCTTCGAGTACACCGTCTTTACAGAATGCTTTGAGTTTAAAATGTTCCACACGTTACGTGACTTGGCGCCAACATTCTCGGAGAGCTTCAGTCCATTTGTCGTTCGCGGCCGTAACGTGGGCCAGAACAAGGGACCGGCTTCGAAAAACCCTGTTATTAGTGGCCGCTCCAGCACCATATCCAATAATTCTAGCgagtatATGGTTAACAACTACATACAGAAGACTACCAGGGCCTCTTGGTCGGAAGAAACAATGAAAAAAGCAATTGCAGAGGCAACAAAATCTTCAATAAAAAGTGCAGCTCAAAAATATGGAATACCGTATACTACGGTGCAACGTCATGTAAAATCGAATATTAGTAAAAAGCATCTCGGCAGGTTTAAGCCTGTATTTAATGAAGAACaagaaaaaaatttagaaaaacattTAAGGGATTTAGATGCACTGTTTTACGGTCTGTCTAGAAATGAATTTATGGAATTAGCTGATACGTTCGCCATACCACATGACTCAGAAACACCACCCATTCTGTCCACTATACCACCAGATGAACTTACTCTACCAGCTGTGACGACACCATTCATTTTGGCACACGATGCTAGCGTAAATGCTTCTGAGCGCACTGTTCGAAGAAAATTGAAAGAATTAGATTTCAAGGCTTGTCGCCCCGCCAGGAAGCCCAAGTTAACAGCTGCAATGAAAGCAAAGCGCCTGAAGTGGGCCAAACAATGGCAAGACAAAGATGTGGACTTCTGGAGATCGGTCTGCTTCAGTGACGAAAGCACATtcgaaattttacaaaataaagctCAGTATGTGCGTCGTCGTCATGGAGAAAAGTTTCATCCTGATTGTGTCGTCCCGACGGTTAAATATCCCACCAAAGTGATGATTTGGTCAGCCATCAGCGGCAAGGGCACTGGACGTCTGTACGTCGTCAAAGGAATAATGAGGCAAGATCAGTATAAAGAAGTACTGGAAAATCGGTTGATTCCGCAGCTCAGAGAATGGTTTCCAAATGGGGAACCATTCACTTTCATGCAAGATGGAGCTCCCTGCCACACTGCTCGGTCTGTTAAAGcttttttggcagaaaaaaataTCCCTCTGTTGGATTGGCCCGGTAATAGCCCTGATATGAACCCCATTGAAAATGTGTGGGAGCTGATGAAAAGAGAAGTGGCTAAAGATGTGATTACCAACAAAACCCAGCTCCTAGAAAAGATTATTTATGTGTGGAATCATCATCCTCAAATGCAGGAGACAGTACAGTCTTGCATTGATAGCATGCCGCGCAGAATTAAAGCTTTGATAGCGGCTAAAGGTGGCTCAACTAAATATTGA
Protein Sequence: MSKQNIMFHPIISSIQRIALYETKARFYLIGSNNTQTRFRVLKIDRTDPKELILVDDKVEYNKQEIHQLLNMIGFGNRGNRSPGFNKLVSAFGIVGFIKFLEGYYIILVTKRRKIAVIGSHSIYKIEDTATIYIPSDNTKPQHPDEQRYLKMFLAIDLSTNFYYSYSYDITHTLQMNMAPPRKLAPALFPKPITAAVYHSNLNSDNSEENKCICHDCDDDEDIFETWKQQLQQRLKKTGEPIPKLEFGIRTVPEWRFVWNSHLLSAVHSYLHPDWILYIVHGFIEQSNLNIFGRPIYLTLIARRSNRYAGTRFLKRGANLHGDVANEVETEQIVHDSMISSFAAGRFSSFVQMRGSIPSYWSQDISKMVPKPAISIDLGDPYAEIPAKHFNNLMRRYGSPIMILNLVKKREKKKHESLLTDAISNAVKYLNQFLSPEHAIQYFHLDMARMNKGADAKVLDKLSAIARTVVRRTGIFLSSKGYDDETGVPGHQSGRLQTGIVRVNCVDCLDRTNTAQFAIGKCVLAHQLYALGLIGEPVIEFDSDCVRLLEGLYEDHGDTLALQYGGSQLVHRIKTYRKTAPWSSHGNDIMQTLSRYYSNTFSDAEKQNTMNLFLGLFVPDAGKPAIWEYPTDYYLHHPEAIVYIPNKRSLTKWWDDDVIRHLPLPCNEMRKLCCEIIGTQGDGALEMLDPYQEYNRPFEYTVFTECFEFKMFHTLRDLAPTFSESFSPFVVRGRNVGQNKGPASKNPVISGRSSTISNNSSEYMVNNYIQKTTRASWSEETMKKAIAEATKSSIKSAAQKYGIPYTTVQRHVKSNISKKHLGRFKPVFNEEQEKNLEKHLRDLDALFYGLSRNEFMELADTFAIPHDSETPPILSTIPPDELTLPAVTTPFILAHDASVNASERTVRRKLKELDFKACRPARKPKLTAAMKAKRLKWAKQWQDKDVDFWRSVCFSDESTFEILQNKAQYVRRRHGEKFHPDCVVPTVKYPTKVMIWSAISGKGTGRLYVVKGIMRQDQYKEVLENRLIPQLREWFPNGEPFTFMQDGAPCHTARSVKAFLAEKNIPLLDWPGNSPDMNPIENVWELMKREVAKDVITNKTQLLEKIIYVWNHHPQMQETVQSCIDSMPRRIKALIAAKGGSTKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -