Papo002237.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- grn_1
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010000160.1:5548890-5703555[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2 3.9e+02 1.5 0.0 30 42 333 345 332 348 0.83 2 2 1.3e-08 2.2e-06 27.9 0.4 2 45 499 540 498 540 0.87
Sequence Information
- Coding Sequence
- ATGGTTTGTGAGGTCGGAGCGGCGGTCATGGACATGAGTGGCGAGGGTGGAGCGGGTGCGGGGGCGGGCGCGCTTCAGCAGCGGTGGTACGACAGCCGCGTGAACGGCAGCCCGGCCGCCGCAGACGTCGGCTCCGACGCGAACGGCGACGGCTTCTTCCACTCGCCGCTAGAGGGCGGACATCACAGTCGCGCCCGTTACTACCATCAACAAATGCACGCCCCCTATTCTGCCGCAGTCGGCTCGCACGGTCGGACGTTAAGTGGCGGCAGCGGACAGGTGTGTCGACCGCATTTCCACACGCCGCTTCACCCTTGGCTGGACTCAAAGGCGCTGGGAGGCGGCGCATGGGGCGGCGGATTCCAGCAGGATGCCGCGCAAGCAGACAAACCTCTTTCCCCTGCCCAACACCATCATCCACACCCCCTTTTCTCCTTCCCTCCGACTCCGCCAAAAGACTCAACTCCCGACTCCGTCGCGGCAGCGGCACTCGGCCAGCAAGACTACCAAGCCGCTGTCGCTCACGCGACCGCTATGAGCGTCGCGTTTATGCAGCAGCAACAGGAGCTACCGCTCTGCGGCGACGTCAAGCCCATGATGGGCGCACCACCATCAAAGCAGCGCGAAGGTGCGCAACCAGACTCGTGCCCCCAAGAGTCGAGTCAGCCCTCCGGGGAATACAACGCGCAGTACAACGCCGCCGGCGGCGACTACTACGGCTACCAGGGGAAGGGGTATAGTCAGCAGCAGAGTAAGCCTCGACCGAACAAGACGCGAACGAGCGCCGAAGGGCGGGAGTGCGTGAACTGCGGGGCGACGAGCACCCCTCTATGGCGGCGCGACGGCACCGGCCACTACCTCTGCAACGCCTGCGGCCTTTACTACAAGATGAACGGACAGAACAGGCCGCTTATTAAGCCAAAGCGAAGATTGGTGAGTTCACTGCAGAGCGCGGCACGGCGGGCTGGCACCTCGTGCGCCAACTGCAAGACTACCACCACCACTCTATGGCGACGCAATCAGAATGGCGAGCCGGTCTGCAACGCCTGCGGCCTCTACTACAAACTGCACAACGTTAACCGGCCATTGACAATGAAAAAGGAGGGGATCCAAACGAGAAATCGGAAGCTAAGcagtaaaagtaaaaagaagAAGGGAGGAATGGGTATGGGTGGCGGTGGTGCTTGTGCACTAGCTCTTGGCGGCGTCATGGGAGACATGATAAAGCCACTAGGGGATGCTACCAAAGGGTTTGGTGGTTCAGCCTTTCCCTCAGCAATGGACTTTGGGCAACACCAAGTGGGTTTGGTGCATCCAGCCGCGGCGCACATGTCGCACTGGTATGGCGCACCGCACCAGGGCTTTGCGCCACCGCCCGCCTCGCATAACCCATACCACCACCATCACCTCGCGCAACTTAATTCCATGACTGGCTGGAGGAGTGAGTACACATGGTTAACAACTACATACGGAAGACTACTAGCCTCTTGGTCGGAAGAAACAATGAAAAAAGCAATTGCAGAGGCAACAAAATCCTCAATAAAAAGTGCATCTCAAAAATATGGAATACCGTATACTACGTTGCAACGTCATGTCAAATCGAATAGTAGTAAAAAACGTCTCGGCAGGTTTAAGCCTGTATTTAATGAAGAACaagaaaaaaatttagaaaaccaTTTAAAGGATTTAGATGCACTGTTTTACGGTCTGTCTGGAAATGAATTTATGGAATTAGCTGGGCGAGTTATTTCACAGTGTGAAGTTGTACGTCTGGTTACACCTGCTTACTTAAAAGTAGCAACACCACAAAACGCCATGAGCGGATTTAGAGCAGCTGGCATTTATCCGTACGATAGAAATGTGATAGATGAAGCGCTATTCGCACCTTCTACAGTCTACGAGGCATCAACTTCACACTCTGCAGGCGAAGACCATGGGGCTCCAACACCTTTTCAATTAGAAGCGACTGTTTCACCTATGACAGCAGATACGTACGCCATACCACATGGTTCAGAAACACCACCAATTCTGTCCACTATACCACGAGATGAAATTACTCCACCAGCTTTGACGACACCACCCATTTTCCCATTTTGGCACATGTACACACTCACAAGATCATTCTTCCGGACCCAACAACATTTGTTTCGAAGACTCCAGAAGACAATCTACGTTGACAGCACCACACACATCCGTTTGTACATTAGCTGTACCACAAGCCATTCATTGTTTTACTGCATTCAGTGTTGA
- Protein Sequence
- MVCEVGAAVMDMSGEGGAGAGAGALQQRWYDSRVNGSPAAADVGSDANGDGFFHSPLEGGHHSRARYYHQQMHAPYSAAVGSHGRTLSGGSGQVCRPHFHTPLHPWLDSKALGGGAWGGGFQQDAAQADKPLSPAQHHHPHPLFSFPPTPPKDSTPDSVAAAALGQQDYQAAVAHATAMSVAFMQQQQELPLCGDVKPMMGAPPSKQREGAQPDSCPQESSQPSGEYNAQYNAAGGDYYGYQGKGYSQQQSKPRPNKTRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLVSSLQSAARRAGTSCANCKTTTTTLWRRNQNGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGGMGMGGGGACALALGGVMGDMIKPLGDATKGFGGSAFPSAMDFGQHQVGLVHPAAAHMSHWYGAPHQGFAPPPASHNPYHHHHLAQLNSMTGWRSEYTWLTTTYGRLLASWSEETMKKAIAEATKSSIKSASQKYGIPYTTLQRHVKSNSSKKRLGRFKPVFNEEQEKNLENHLKDLDALFYGLSGNEFMELAGRVISQCEVVRLVTPAYLKVATPQNAMSGFRAAGIYPYDRNVIDEALFAPSTVYEASTSHSAGEDHGAPTPFQLEATVSPMTADTYAIPHGSETPPILSTIPRDEITPPALTTPPIFPFWHMYTLTRSFFRTQQHLFRRLQKTIYVDSTTHIRLYISCTTSHSLFYCIQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154694;
- 90% Identity
- iTF_01154694;
- 80% Identity
- iTF_01154694;