Papo009060.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010000644.1:7168058-7168543[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-15 6.2e-13 48.9 0.2 1 42 12 53 12 55 0.90 2 2 7.4 1.3e+03 -0.2 0.0 23 31 97 105 97 105 0.88
Sequence Information
- Coding Sequence
- ATGTCTCCATCAAAACAAAAACGCGCTACCTGGTCAGAAGATAGTTTGGCCGCGGCAGTTCGTGCGGTACGTAATGGAATGTCAACTTATAAAGCATCAGCACAATATGGTATCCCGCGAAGAACTATAAGAAACCATGTCAAAAATGGGAAGATCACCAAAAGATTAGGAAGACAGACTATATTCACTTCAGATCAAGAAAAAGATTTTATAAAACGAATAATAAAGTTCTCGCAGCTGGGTATACCTTTGACTCCGAAAATGATCAGAATACAGGCGTTTGCTTTTTGTCAGAAATTTAGTATTCCTCATAACTTTAACGAACAATCAGGGCTTGCTGGAAAAGGATGGTTGAGgatgtttttaaaaagaaaccCAGAGCTGGCCAAACGTAAGGCACAGTTTCGAAATCCAGCCTGTgcccaaaaattaaataaacccaTTGTATTCCACCATTTTgaagaagtaaaaaaaactttacgaTGA
- Protein Sequence
- MSPSKQKRATWSEDSLAAAVRAVRNGMSTYKASAQYGIPRRTIRNHVKNGKITKRLGRQTIFTSDQEKDFIKRIIKFSQLGIPLTPKMIRIQAFAFCQKFSIPHNFNEQSGLAGKGWLRMFLKRNPELAKRKAQFRNPACAQKLNKPIVFHHFEEVKKTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -