Papo026268.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001576.1:8069888-8070865[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-15 4.1e-13 49.5 0.2 1 42 12 53 12 55 0.89 2 2 9.6 1.7e+03 -0.5 0.0 23 31 97 105 97 105 0.88
Sequence Information
- Coding Sequence
- ATGTCTCCATCAAAACAAAAACGCGCTACTTGGTCAGAAGATAGTTTGGCCGCGGCAGTTCGTGCGGTACGTAATGGAATGTCAACTTATAAAGCATCAGCGCAATATGGTATCCCGCGAAGAACTCTAAGAAACCATGTCAAAAATGGGAAGATCACCAAAAGATTAGGAAGACAGACTATATTCACTTCAGATCAAGAAAAAGATTTTGTAAAACGAATAATAAAGTTCTCGCAGCTGGGCATACCTTTGACCCCGAAAATGATCAGAATACAGGCGTTTGCTTTTTGTCAGAAATTTAATATTCCTCATAACTTTAACGAACAATCAGGGCTTGCTGGAAAAGGATGGTTGAggttgtttttaaaaagaaaccCAGAGATGGCCAAACGTAAGGCACAGTTTCTAAATCCAGCCCGTGCCCAAAAATTGAATAAACCCATTGTATTCCACCATTTTGAACAAGTAAAAAAACTTTACGATGAACTGGAATTGCATAACCATCCAGAAAAAATTTATAACATGGATGAAAAGGGCTGCAGGCTTACGTTACATCACCAGCAGACAGTGATCTCACAAAAAGGAGCAAAGAGGGTACACATACAAGTGGCAGAACATGGAGAAAATGTAACAGTTGTTGGTTGCGCCAATGCGATTGGAAATCCTGTACCTCCAATGATTTTGTTTAAAGGAAAAAGGAAGATGGCAGAGTATGAAAAAAATCTTCCTCCAGGGTCTATTGTTCAAATGGCTAGAAAAGGAAGCATGACAGCAGACCTATTCATCATCTTTATTAAACACCTAGCCAAATATAAAACATTTGGAAAATGTTTACTCATTTTTGATGGCGCAAAGTGCCGCTTGGATTTTCGCATCGTAGAAGAAGCTGAAAAAAATGACATAGTGCTGTATTGTCTGCCATCGAATACTACGCACGAGGTTGCAACCTATGGACAAGACCTGTTTCAAGCCATTTGA
- Protein Sequence
- MSPSKQKRATWSEDSLAAAVRAVRNGMSTYKASAQYGIPRRTLRNHVKNGKITKRLGRQTIFTSDQEKDFVKRIIKFSQLGIPLTPKMIRIQAFAFCQKFNIPHNFNEQSGLAGKGWLRLFLKRNPEMAKRKAQFLNPARAQKLNKPIVFHHFEQVKKLYDELELHNHPEKIYNMDEKGCRLTLHHQQTVISQKGAKRVHIQVAEHGENVTVVGCANAIGNPVPPMILFKGKRKMAEYEKNLPPGSIVQMARKGSMTADLFIIFIKHLAKYKTFGKCLLIFDGAKCRLDFRIVEEAEKNDIVLYCLPSNTTHEVATYGQDLFQAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00261777;
- 90% Identity
- -
- 80% Identity
- -