Papo027145.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001624.1:965932-1004130[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-08 4.2e-06 27.0 0.0 2 34 916 948 915 953 0.92 2 2 1.9e-07 3.4e-05 24.1 0.0 4 38 993 1027 990 1034 0.89
Sequence Information
- Coding Sequence
- ATGGATGTTCCTCTCAAGAAAAAGAGCTACATTCAAAAATATAGGACTGAATGGGAGAATGACGAAGACTTTAAACAGTGGATAAAGCCAATAGCGGATAGTCCAACGAAAGCCTTTTGCAAGTATTGTCATGTAGAAATTGCTGCCAAAATTTATGATTTACGTAAGCACAGAGAATCTAAAAAACACAAAGCAAAATGTGAATtaatcacaaaaaataaacagatcCAGTTTACCTCTACACCTGATGATGGTTCAAAGAACAGTCAAAAAGCTGAAGGCCAGCTTGCCttgttcattgctgaacatacttCCATATCCAACACTGACCACCTTACAGACCTTTGTAAAGAAGTTTTTCATGATTCAAAGTGTGCCaaagatataaaaattaatagaactaAATGTACGCAAGTTATAAATCAAGTGCTGGCGCCGCATTTTAAGGATACTCTTCTAAAAGATATTGGCACGCagaaatatagtattattttagaTGAATCTACGGATGTTAGCGTCTCAAAATACATGGGAATAATAATACGATATTTTAGCCTGAATACGAATAATATTGTGTCATCATTTCTGTCTCTGGAGCCTATTGAAAGAGCTGATGCGAGAGGTATTGTCACATCTTTAGTAAAATGTTTGGAGTCACAAAGTCTTCCAATACAAAATTTGATTGGGATCGGCACCGACAATGCCTCGGTCATGACGGGCCGAAATAACAGCGTAATTGAAATTTTGAAGAGagaatataatttaccaaatttgATCCTCATTAGATGCATCTGCCACTCTTTGCAATTGGCGGTCAGCCATGCGTCTGAAAGCAATCTGCCACGTAACATAGAATTTCTGATAAGAGAGACGTACAACTGGTTCTCCATTTCTCCAAAACGCCGAGACGAATATAAAGCGCTGTTTCAAACAATTAACTGCGGGGATGaaccattaaaaatattaaaggttTGTGACACCCGTTGGTTATCAATAGAGCCTGCTGTGTTGAGAATATTGGCACAATGGAACGAGTTAAAACTACATTTTTCTTTGGCCAGAGAGAAGTGCTATACAGCGGGACTTCTTTGGGAAATGTACAATGACGAGGGTAATCGTCTTTACTTATGTTTTTTGAAAAGTATTCTTCACGACGTTCAAATTGGCATTAAGGTATTTGAAGGTGAAAATATTGATCCTGTCAAACTGTTAGAAACTCTGATGACCTTGTTACGATCTGTCTGCGTTAGAATAATAATACCAGGCGCCGCGACAACAGACAAAGATTTCCTCACTATCAAAGTAGAAGATCATCTAGATCCAGTTGCACATTTGGGACATCTTTTCGAATCTCATGCCAGTAATAGCAACTTATCTCCGCAAGCAATTTCTAATATCAAAAAACGATGCATCGACTTCAGTGTCAAGTTGGTACAAGAAATTCAGAACAGAATACCTTCTAATTACGAGATCCTAGCAAAAGTAACACTCTTAAGTCCAGAGAACACATTAAAACAGATCAAGGATCCTCATGCACTGGTTGGATTAGCAAGAGAATTGGGATTCGATGACCAAAAGACAGATAAAATTGTTCAACAATGGAAAACTATACAATTCATAGAATGGGAAACTGCAGGAGACAGTGAATGTTATGATGTACTCTCAACTTCCAAGGCTAAAACTGTTAATGATAATGTTCCCTTAACGCTACCACCTCCAATACGAAATATTgAATGTGATAATGTACCCTCAACTTTCCGGGCTCACTCACATAAAACTGTCAATGATAATGTTTCCATACCGCTATCACCTCCTTTTCAAAATATAGATTTTGCTAGTGAAGCTTCAAGTTCCTCGACCCATGAAAATCTATCGATTCAGTCAGATGACAGTGATGACACAACTAAACAAAACCCTGATTTTGCTAGTGAAGCTTCAAGTTCCTCGACCCATGAAAATCTATCGATTCAGTCAGATGACAGTGATGACACAAATAAACAAAACCCTgaaaataaaaatgaagcatCATTCAAACGACGAGCTTTAAAAGATTTTAACATTGAAGCAAATTTGAAGACATCGCGCAAACTACATTCAGAGGAACGCATAAAAACATTACAGCAAGACGTGGAGAGACAGGGGCGAAAAATTAATGACGTGAATTCGCACATCAATTTGGTCCAGGATTATTCTCATTCTGAAAGTGATTGGAGTGAAAATGGTGACGGTGATGGTGAAACGGTGATCTTCATAGGAAGATGTAAATGTTGCCTTAATGGGGGAGACTTAAAGAATTTGTGGACGCCGTATACGTTTGAAGGAGAAACCGAAATTTATGGAATGATGTTGACAGAATGTTTTGCTCTATCATGGCAGCAACCAGAGGACAACATGAAATGTATGGATATGATATGCACCTCTTGTATCTCTCGGTTACGTGATGCACTTGCCTTCAAAAGAGAAGTTTTAGTGAGTGAAGAGGTGCTGCATGAAAAACAAGATGGAATaataattaacactaaaacatTGAAAGAGGGGAATTATTTAAAAGAGgaagaggaagaagaagaaaCAGAGTTTAAAGAAGTGGAATACTTAGAGATCACCGACAGTTTAAACAAAGATGAATCTCTCTCAGATGAACAATGGCTGGATTCAGATACTTCCCTGCTAGTAGAACGTAAAAGAAAGTTGTCAAAAAAGCTCTCAAAGGAAGAGAGGAACAAAACATGCAAGCGGTATACTGCGGAGGAACTACAAATGGCCATTGATGCAGTCCAGAACAATGAAATGTCGCATGCAGAAGCGGCTGAGTGTTTTAATGTGCCGAGGCGAACTATCTCTGCTAAGATCCACAGTATTATAGACAAAGAAGAGGAACAATCGCAGAGTGCAGAAGACAATCGTAAAATAGAATGGCCGAAGAAACTACCAATTAAAGATAGAAACAAAACATACAAGCAGTATACCAAAAAGGCAATGAGAATGGCCATTGATGCTGTCCGGAAAAAAGGGATGTCACGTAGCAAAGCATCAGAGATGTTTAAGGTGCCTAAGAAGACTCTAGGTACTAGGCTTAGACTTCAGAATATTACTGTCAAAAACGAGGGTAAGTCaacttaa
- Protein Sequence
- MDVPLKKKSYIQKYRTEWENDEDFKQWIKPIADSPTKAFCKYCHVEIAAKIYDLRKHRESKKHKAKCELITKNKQIQFTSTPDDGSKNSQKAEGQLALFIAEHTSISNTDHLTDLCKEVFHDSKCAKDIKINRTKCTQVINQVLAPHFKDTLLKDIGTQKYSIILDESTDVSVSKYMGIIIRYFSLNTNNIVSSFLSLEPIERADARGIVTSLVKCLESQSLPIQNLIGIGTDNASVMTGRNNSVIEILKREYNLPNLILIRCICHSLQLAVSHASESNLPRNIEFLIRETYNWFSISPKRRDEYKALFQTINCGDEPLKILKVCDTRWLSIEPAVLRILAQWNELKLHFSLAREKCYTAGLLWEMYNDEGNRLYLCFLKSILHDVQIGIKVFEGENIDPVKLLETLMTLLRSVCVRIIIPGAATTDKDFLTIKVEDHLDPVAHLGHLFESHASNSNLSPQAISNIKKRCIDFSVKLVQEIQNRIPSNYEILAKVTLLSPENTLKQIKDPHALVGLARELGFDDQKTDKIVQQWKTIQFIEWETAGDSECYDVLSTSKAKTVNDNVPLTLPPPIRNIECDNVPSTFRAHSHKTVNDNVSIPLSPPFQNIDFASEASSSSTHENLSIQSDDSDDTTKQNPDFASEASSSSTHENLSIQSDDSDDTNKQNPENKNEASFKRRALKDFNIEANLKTSRKLHSEERIKTLQQDVERQGRKINDVNSHINLVQDYSHSESDWSENGDGDGETVIFIGRCKCCLNGGDLKNLWTPYTFEGETEIYGMMLTECFALSWQQPEDNMKCMDMICTSCISRLRDALAFKREVLVSEEVLHEKQDGIIINTKTLKEGNYLKEEEEEEETEFKEVEYLEITDSLNKDESLSDEQWLDSDTSLLVERKRKLSKKLSKEERNKTCKRYTAEELQMAIDAVQNNEMSHAEAAECFNVPRRTISAKIHSIIDKEEEQSQSAEDNRKIEWPKKLPIKDRNKTYKQYTKKAMRMAIDAVRKKGMSRSKASEMFKVPKKTLGTRLRLQNITVKNEGKST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -