Basic Information

Insect: Parnassius apollo
Gene Symbol: -
Assembly: GCA_907164705.1
Location: CAJQZP010000426.1:436313-457744[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 8.4e-09 1.5e-06 28.4 0.0 4 39 66 102 63 106 0.88

2 6 6.4e-05 0.011 16.0 0.8 2 27 118 143 117 143 0.94

3 6 0.72 1.3e+02 3.1 0.1 3 27 168 192 166 196 0.88

4 6 1.5e-11 2.8e-09 37.2 0.3 2 39 244 281 243 284 0.92

5 6 7.9e-13 1.4e-10 41.3 0.0 4 45 301 343 298 343 0.96

6 6 6.2e-18 1.1e-15 57.7 0.0 1 43 350 393 350 394 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	8.4e-09	1.5e-06	28.4	0.0	4	39	66	102	63	106	0.88
2	6	6.4e-05	0.011	16.0	0.8	2	27	118	143	117	143	0.94
3	6	0.72	1.3e+02	3.1	0.1	3	27	168	192	166	196	0.88
4	6	1.5e-11	2.8e-09	37.2	0.3	2	39	244	281	243	284	0.92
5	6	7.9e-13	1.4e-10	41.3	0.0	4	45	301	343	298	343	0.96
6	6	6.2e-18	1.1e-15	57.7	0.0	1	43	350	393	350	394	0.96

Sequence Information

Coding Sequence: ATGCAATTACTTGGCACCAGTGAAGAGGACTCGGACTTCGTGCCTCTGCTGCCTATTAAAGACGAGCCCTTGTCGGAGGGAGAACAACTACAGCTGAGTGATGAGGCGAGTGAAACCAGCGGAGTGGGAGTGGGTGGGGAAGGGGGGGAGGGGGAGGCGCGCAGCAGCCCCGGCAGCAAAGGTTGGGCGCCGCGCGACATGGAGTGTGCTCTGCAGGCCCTGCGAGACCGCCGCATGAGCCTCACCAAGGCGTCGGCGACATACGGCATTCCGTCCACAACGCTATGGCAGCGCGCGCACCGGTTGGGCATCGACACGCCGAAGAAGGACGGCGGCGCCAAGAGCTGGAGCGACGCGGACCTGCGCGCTGCACTGCACGCACTGCGCGCCGGCGCGCTCTCCGCCAACAAGGCCAGCAAGGCTTACGGTCAGCGCTCACTTTGTCTCATTCACACGCTCCACCGCTCACTCACTCACCTTGGTCACAAGAACTTGAGCGACGCAGACCTGCGCGCCGCACAGCACGCACTGCGCACCGGCGCGCTCTTCGCCAACAAGGCCAGCAAGGCTTACGAACTTGAGCGACGCGGACCTGCGCGCTGCACTGCACGCACTGCGCGCCGGCGCGCTCGCCGCCAACAAGGCCAGCGAGGCTTACGGTCAGCGCTCACTTTGTCTCATTCGCAAGCTCACCCACTCACTCACTCACCTGGTCGCAAGAACTTGAGCGACGCAGACCTGCGCGCCGCACTGCACGCACTGCGCGCCGGCGCGCTCTCCGCCAACAAGGCCAGCAAGGCTTACGGTATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGTCTGGCAGCTCCTTTCAACGCGGCGCCGACGTCCTGGCACCGCAGCGATCTGCAGCACGCGCTCGCCGCCATTCGCTGTGGCGCTGCATCCGTGCAGCGTGCCGCCGCACAGTTCGGCATCCCCACcgGTACTCTATATGGAAGATGCAAACGAGAAGGTATCGAGCTATCTCGATCCAACCCTACGCCCTGGTCGGAAGACGCTATGGGTGAAGCGCTAGAAGCAGTAAGGGTGGGCCAAATGTCTATTAACCAGGCGGCGATACATTACAACTTGCCGTACTCCTCACTGTACGGCAGATTTAAGCGGTGTAAATATCAGCTGCAGGGTCAACCGGTGCACCAatcaaaaatggaaaaaaatatagaaatagatCATCAACACCAACATCAGGATCAAGAACCCTTCTCCTACCATTCTTTACCGCCTCACGCTGATCCTAATACGTCGGACGATCAAACGAACGTTCAAATACCGTACAGCCAACTATTGAGTGAAGTCCACGATACCATGCACGGTCACATGGTATTGCAGGAGCAATATAGCGGGCAGGGACTTTACTACACGCAAGGTTATTACAGTGGTATGGCCACCAGTTGA
Protein Sequence: MQLLGTSEEDSDFVPLLPIKDEPLSEGEQLQLSDEASETSGVGVGGEGGEGEARSSPGSKGWAPRDMECALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGGAKSWSDADLRAALHALRAGALSANKASKAYGQRSLCLIHTLHRSLTHLGHKNLSDADLRAAQHALRTGALFANKASKAYELERRGPARCTARTARRRARRQQGQRGLRSALTLSHSQAHPLTHSPGRKNLSDADLRAALHALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWHRSDLQHALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLQGQPVHQSKMEKNIEIDHQHQHQDQEPFSYHSLPPHADPNTSDDQTNVQIPYSQLLSEVHDTMHGHMVLQEQYSGQGLYYTQGYYSGMATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -