Pahi003893.1
Basic Information
- Insect
- Parelbella ahira
- Gene Symbol
- nfxl1
- Assembly
- GCA_018244795.1
- Location
- DWME01002181.1:130-1668[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5 1.1e+04 -2.8 0.7 5 10 20 25 20 25 0.90 2 17 1.9e-06 0.013 16.1 18.3 3 19 33 49 32 49 0.93 3 17 4 2.8e+04 -4.4 1.8 5 10 72 77 72 77 0.87 4 17 0.0038 27 5.5 17.9 2 18 84 100 83 101 0.91 5 17 9.2e-08 0.00065 20.3 18.1 1 18 110 127 110 128 0.98 6 17 1.6 1.1e+04 -2.8 1.5 5 10 156 161 156 161 0.74 7 17 4.2e-05 0.3 11.8 5.5 8 19 175 186 174 186 0.89 8 17 0.034 2.4e+02 2.5 7.9 3 12 197 206 196 206 0.90 9 17 0.49 3.4e+03 -1.2 3.4 14 18 235 239 235 240 0.85 10 17 0.31 2.2e+03 -0.6 0.2 8 12 256 260 255 260 0.79 11 17 3.3e-06 0.023 15.3 6.7 1 11 276 286 276 287 0.98 12 17 0.85 5.9e+03 -2.0 0.7 15 18 301 304 300 305 0.86 13 17 0.014 96 3.8 18.8 4 18 318 333 316 334 0.84 14 17 4 2.8e+04 -4.4 2.4 9 13 340 344 339 344 0.74 15 17 0.19 1.3e+03 0.1 0.9 9 16 363 370 361 371 0.89 16 17 2.5e-07 0.0017 18.9 10.2 1 16 375 389 375 395 0.88 17 17 4 2.8e+04 -4.4 1.3 5 10 424 429 424 429 0.83
Sequence Information
- Coding Sequence
- ATGACATGTCCTTGTGGAGCTAATAAGAAACATGTTGAATGTCCTGACATTATTGAAACATGTATGAGCACTTGTAACAAAAAGCATGAAGACTGTGAACATAGCTGTCCTGAGAAATGCCATAAGGGACCATGCCCACCTTGTCAAGTTGTTGTGGAGAAGAAATGCCAATGTCTAACCCATACCAAACTGTTGCCATGTTGCAAAGAGTTTAGATGTGAGACTAAATGTAGAGGAACTAGACCATGTAGAAAGCATGGTTGTGGCAGGAAGTGCTGTAATGGTAACTGTCCACCTTGTGAGAAAGTATGTGATAAGCCCTTACATTGTGGCCGCCATAGGTGCACCAATATCTGCCATCATGGTCCATGCTATCCTTGCCACAGAGAATCTAAAATTACATGTCGATGCAAGGAAACCTATATCACTATTCCTTGTGGCAGGGAAAAACAGACAAAACCACCAAGATGCCACCAACCCTGCAAAATTAGATACAAGTGTGGACACATAACAGAAAACCAACACATTTGTCATTTTGGTGATTGCCCACCGTGCAAAGCAGTATGCGCTAAGTCTTATCCAAAATGTGAACATAACTGCAAAGCTACTTGTCATGAATATGTTGCTGTGGTCTTCAAGCAGGTAGAGAAACCAGCTACTCCGTGGGAAGTTCAACCgccaaaaactaaaataatgacCCTTGAGTGTCCTCCATGTGATGCTCCTGTGCCTATTACATGCTTTGGGAACCATGATGTTGGGGATCAGCCATGCCATTCTGCAAGTCGTAGATCCTGTGGTAGAGAATGTGGCCAGCCATTAGCTTGTGGCAACCACAAGTGTACACAACTGTGTCATTTGCTCAAGTATGATGCTGACTATCCTAATGTGTCATATATTTGCAGGCCATGCAACAGAGAGTGCACAGTAGTCCGTCCAGAGAAATGTTGCCATAAATGTGCAATTAGAGGCTGCCATACAGGACCCTGCCCACCTTGCGAGATCCTAGAAAGGGTGCCTTGTCACTGTGGAGTTACAGAACTCTATTTACGTTGTAAAGAACTTTCAACAGTTTCAGAAGATATGCTATGCTGCAACCAGCAATGTCCACGTAATTTAGTGTGTGGACatcgttgtaaaaatatttgtcattctGGCCCATGCAATCAAGATCAAGTTTGTCTGaagaaaacaaaagtttattgTCCTTGCGGTAACATTAAGAGAATGGTGCCTTGCAACACTGCTCGTAATGCAGAAAAAACTATTACTTGTGACACTACTTGTGAAGCCAAGGAAAAAGCAGCAAAATTGGAGAGGGAGAAAGAAGAACAGAGGTTAAGAGAGTTGGAAGAAGAGAGGAATCGAAGAGAGTTAGCTGAGTATGAATGGAAGTTAAGTGGCaaaaagaagaaatataaaGAAGTTAAGGTTGTGGTTAATAAAGATGACAGAAGTATTGTACAGAAGTACTGGGTTCCTATTTTGTCTCTATTTGTGTTAGTATTAGCtgctttttattacatatttctagtttaa
- Protein Sequence
- MTCPCGANKKHVECPDIIETCMSTCNKKHEDCEHSCPEKCHKGPCPPCQVVVEKKCQCLTHTKLLPCCKEFRCETKCRGTRPCRKHGCGRKCCNGNCPPCEKVCDKPLHCGRHRCTNICHHGPCYPCHRESKITCRCKETYITIPCGREKQTKPPRCHQPCKIRYKCGHITENQHICHFGDCPPCKAVCAKSYPKCEHNCKATCHEYVAVVFKQVEKPATPWEVQPPKTKIMTLECPPCDAPVPITCFGNHDVGDQPCHSASRRSCGRECGQPLACGNHKCTQLCHLLKYDADYPNVSYICRPCNRECTVVRPEKCCHKCAIRGCHTGPCPPCEILERVPCHCGVTELYLRCKELSTVSEDMLCCNQQCPRNLVCGHRCKNICHSGPCNQDQVCLKKTKVYCPCGNIKRMVPCNTARNAEKTITCDTTCEAKEKAAKLEREKEEQRLRELEEERNRRELAEYEWKLSGKKKKYKEVKVVVNKDDRSIVQKYWVPILSLFVLVLAAFYYIFLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -