Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4 2.8e+04 -6.3 5.6 15 19 134 138 133 138 0.81

2 8 0.0098 69 4.2 0.7 4 10 169 175 168 175 0.97

3 8 2e-07 0.0014 19.2 15.9 3 19 186 202 185 202 0.95

4 8 3.4 2.4e+04 -3.9 0.6 1 3 227 229 227 234 0.50

5 8 3.9e-09 2.7e-05 24.7 13.3 3 19 239 255 237 255 0.91

6 8 3 2.1e+04 -3.7 0.4 16 18 260 262 260 263 0.48

7 8 3.1 2.2e+04 -3.8 1.7 6 10 280 284 279 284 0.85

8 8 1.9e-06 0.013 16.1 8.8 1 16 290 305 290 305 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4	2.8e+04	-6.3	5.6	15	19	134	138	133	138	0.81
2	8	0.0098	69	4.2	0.7	4	10	169	175	168	175	0.97
3	8	2e-07	0.0014	19.2	15.9	3	19	186	202	185	202	0.95
4	8	3.4	2.4e+04	-3.9	0.6	1	3	227	229	227	234	0.50
5	8	3.9e-09	2.7e-05	24.7	13.3	3	19	239	255	237	255	0.91
6	8	3	2.1e+04	-3.7	0.4	16	18	260	262	260	263	0.48
7	8	3.1	2.2e+04	-3.8	1.7	6	10	280	284	279	284	0.85
8	8	1.9e-06	0.013	16.1	8.8	1	16	290	305	290	305	0.95

Coding Sequence: ATGTCACGAAAGTATAAGGACGCAGCTGCAAAATTGCAGCAAAGCGTGCAgaaacatttaaagaaaataaatgatgtCTCTTCATCGGAAGATGAGGAACCCTACGAATCCAGTGTTCTCGAAGGCGTTTTCCAGAGTTACTGGAGGGGTGGTGGGGACACCCAAATGCTGAATAGAACAAAGAACCTTCTAGAAGAAGCTATAAGTGGCCGTACAATTACGTGTCTTATTTGCATTGGCTCGATCAAAAGGGTAGATGCTATTTGGACTTGTGACCACTGTTACTGTTACTTCCACTTATCTTGCATACAAAAATGGGCAAACGATAGCATATTCTTGATCACAAAAGAAAATCAAGGCCCCATTGCTGTGGTTGGGTTGAAGAAAATAGAATGGTGTTGCCCCAAATGTCGGCACGCGTACGTTAAAGAAGAAATACCACGTCGGTATAGATGTCTATGTGGCAAAACCGAAGACCCGCCCTTCCATCCTTGGCTAATACCCCATACATGTGGGGAGGTTTGTGGAAGGAGGCTTTCAACAGGAGAAAATTGCAAACACAAGTGTCTTCTGTTGTGTCATCCCGGGCCTTGTCCACCGTGTCCACAAACAGTCAATGGAGCCTGTTACTGTCAGAAGGAATCTATGAGAGTGAGATGCAGTGCTGCAAGATGGTCTTGTGGCcagcaatgtaaaaaaatattgcaatgcaAGTCACATACGTGTGAAAACCTCTGCCATGAAGGTGACTGTCCGCCGTGCACCTACACAAGTCTACAGCCTTGTCAGTGTGGAGCTGAGAAAGTAAAAAGACCTTGTGATGATCCTAACTGGCAATGTACTAGGAAATGTAACAAAGCATACACATGTGGCTatcataaatgtgaaaaaatttgCCATTCAAATAATTGTGGTCA
Protein Sequence: MSRKYKDAAAKLQQSVQKHLKKINDVSSSEDEEPYESSVLEGVFQSYWRGGGDTQMLNRTKNLLEEAISGRTITCLICIGSIKRVDAIWTCDHCYCYFHLSCIQKWANDSIFLITKENQGPIAVVGLKKIEWCCPKCRHAYVKEEIPRRYRCLCGKTEDPPFHPWLIPHTCGEVCGRRLSTGENCKHKCLLLCHPGPCPPCPQTVNGACYCQKESMRVRCSAARWSCGQQCKKILQCKSHTCENLCHEGDCPPCTYTSLQPCQCGAEKVKRPCDDPNWQCTRKCNKAYTCGYHKCEKICHSNNCG

Sequence clustering based on sequence similarity using MMseqs2