Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.2 8.4e+03 -2.4 1.6 15 19 5 9 4 9 0.81

2 10 0.02 1.4e+02 3.2 1.2 2 10 37 45 37 45 0.93

3 10 1.8e-05 0.13 13.0 18.1 4 19 53 68 51 68 0.93

4 10 1.4e-08 9.9e-05 22.9 14.6 1 19 104 122 104 122 0.97

5 10 0.00021 1.5 9.6 11.3 1 19 161 179 161 179 0.98

6 10 1.9e-06 0.014 16.1 12.1 1 19 220 242 220 242 0.89

7 10 1.7 1.2e+04 -2.9 1.7 6 10 272 276 272 276 0.95

8 10 7.7e-06 0.054 14.2 7.5 1 14 282 295 282 295 0.97

9 10 0.44 3.1e+03 -1.1 0.5 4 10 297 303 296 305 0.88

10 10 1.4e-06 0.0097 16.5 15.4 1 19 309 327 303 327 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.2	8.4e+03	-2.4	1.6	15	19	5	9	4	9	0.81
2	10	0.02	1.4e+02	3.2	1.2	2	10	37	45	37	45	0.93
3	10	1.8e-05	0.13	13.0	18.1	4	19	53	68	51	68	0.93
4	10	1.4e-08	9.9e-05	22.9	14.6	1	19	104	122	104	122	0.97
5	10	0.00021	1.5	9.6	11.3	1	19	161	179	161	179	0.98
6	10	1.9e-06	0.014	16.1	12.1	1	19	220	242	220	242	0.89
7	10	1.7	1.2e+04	-2.9	1.7	6	10	272	276	272	276	0.95
8	10	7.7e-06	0.054	14.2	7.5	1	14	282	295	282	295	0.97
9	10	0.44	3.1e+03	-1.1	0.5	4	10	297	303	296	305	0.88
10	10	1.4e-06	0.0097	16.5	15.4	1	19	309	327	303	327	0.87

Coding Sequence: GGCAAATGGCGTTGCCCAGCGTGCCAGAACCCATCCAACGATATTCCAATGGAGTATCGTTGCATGTGCGGGACGGTGCGCAACCCCGAGTACCAGCGGGGCTCGAGCGGCGCGCATACATGCGGTCGCGCGTGCCAACGGCCGCGTAGCTGTCCACATCCGTGCACGTTACTGTGCCACCCGGGCCCTTGCCCGCCGTGTCAGGCCACTGTCAACAAACAATGTGGTTGCGGCACAGAGACACGATTGATATTATGTAGCAGCAAGTTGCCTCAATTGTGCGGACGGGAGTGTCGAAAGAAATTAAACTGTGGCGTGCACACGTGCAAGAAAGAGTGCCACGAGGGGCCCTGCGACGAGTGCCAGGAGACCGTTACACAAATATGCTACTGCGCGGTGTCCAAGTCGCGCGTGGTGGCGTGCGAGCGCGGCACGACGGTGCAGTGGGCGTGCGGCGCGGAGTGCGGCCGCGTGCTGCCGTGCGGCGCGCACGTGTGCCGCCGCGCGTGCCACGCGCCGCCCTGCACCGCGTGTCCGTTGCGCCCCGAAAATGTGCTCGCGTGCCCTTGCGGGAAGACTAGGATAGAGAGAGGTCAGCGAAAGAAGTGTACCGACCCCATCCCGTTGTGCGACAACATCTGCGCCAAGCCCCTGCGCTGTGGGCCCGAGGAGGAGAGGCATTTTTGCAAGGAGAACTGCCATGAagGAGAATGCCCTGTGTGCCCGGACTTCACCCATATCCAGTGTCGCTGCGGGCACTCGACCCGCGAGGTACCGTGCCGGGATCTGACGCTCCCGGAGAACAGCGTCTTATGCCAGCGGAAGTGCAATAAGAAAATGAACTGCGGCCGGCACCGGTGTCGCGAGGTGTGCTGTGACGGCAACGAGCACATATGTACGGTGGTGTGCGGTCGCAGCCTGTTTTGCCAGCAGCATCGTTGTGAGGAGTACTGCCACGCCGGCCACTGCGCACCCTGCCCGCGCCTCAGTGAGTTGTTTGTAACGAGACCTGACTACATGAAGGATATATCTGTTTAA
Protein Sequence: GKWRCPACQNPSNDIPMEYRCMCGTVRNPEYQRGSSGAHTCGRACQRPRSCPHPCTLLCHPGPCPPCQATVNKQCGCGTETRLILCSSKLPQLCGRECRKKLNCGVHTCKKECHEGPCDECQETVTQICYCAVSKSRVVACERGTTVQWACGAECGRVLPCGAHVCRRACHAPPCTACPLRPENVLACPCGKTRIERGQRKKCTDPIPLCDNICAKPLRCGPEEERHFCKENCHEGECPVCPDFTHIQCRCGHSTREVPCRDLTLPENSVLCQRKCNKKMNCGRHRCREVCCDGNEHICTVVCGRSLFCQQHRCEEYCHAGHCAPCPRLSELFVTRPDYMKDISV

Sequence clustering based on sequence similarity using MMseqs2