Basic Information

Insect: Parelbella ahira
Gene Symbol: ush
Assembly: GCA_018244795.1
Location: DWME01007257.1:8496-11139[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0063 0.45 11.7 0.2 1 20 96 115 96 117 0.95

2 9 0.0001 0.0071 17.4 0.9 1 23 153 175 153 175 0.98

3 9 0.13 9.4 7.5 0.2 3 20 206 223 205 225 0.92

4 9 0.019 1.4 10.2 3.9 2 21 465 484 464 485 0.95

5 9 0.0082 0.59 11.3 0.2 3 20 514 531 512 533 0.91

6 9 0.22 16 6.9 0.1 2 23 561 582 560 582 0.96

7 9 0.0097 0.69 11.1 1.3 1 23 588 610 588 610 0.99

8 9 0.51 36 5.7 0.7 1 23 648 671 648 671 0.95

9 9 2.4 1.7e+02 3.6 0.7 3 20 705 722 704 724 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0063	0.45	11.7	0.2	1	20	96	115	96	117	0.95
2	9	0.0001	0.0071	17.4	0.9	1	23	153	175	153	175	0.98
3	9	0.13	9.4	7.5	0.2	3	20	206	223	205	225	0.92
4	9	0.019	1.4	10.2	3.9	2	21	465	484	464	485	0.95
5	9	0.0082	0.59	11.3	0.2	3	20	514	531	512	533	0.91
6	9	0.22	16	6.9	0.1	2	23	561	582	560	582	0.96
7	9	0.0097	0.69	11.1	1.3	1	23	588	610	588	610	0.99
8	9	0.51	36	5.7	0.7	1	23	648	671	648	671	0.95
9	9	2.4	1.7e+02	3.6	0.7	3	20	705	722	704	724	0.91

Sequence Information

Coding Sequence: ATGCCGGGAGAACCTCGAACGCCGAGCTCTGGGGGCGAGCGAGCCGCGTCAAGCAGGGACGCATCGCCAGCGTCGGAAGGATCACTTGTCGCTTCGCCGCCAAGATTACGTCTCAACGCAAGCCTCGCTACAGATCCAGCACTCGCACCACAAGCAACATCTCTCAAACATGAGCCGCCTTCTCCATCTCCTCCACCACCTCCTGCACCTCAGACAAGAGAAAATATAGCACTGTCAGCTGCAGCCGCTTTTCCTTCGCTGTTCCCAGTAACGGCCGCGCCTGGATATACATGCCAACCCTGTGGCATTCGTTATTCTTCATTAAGCACTTTACAAGCGCATCAAGAACATTATTGTTCAAAGAGAAGACCGAAACCGGATTCTACGGATGGGCCCACAGACGCGGCGGATGATTCGAGTAGTGAAGCAAAAACGCCAAGACCTCCGGGAAAACAATATGCTTGTACTTACTGTTCGTATAGCGCTGACAAAAAAGTTAGTTTAAATCGCCATATGCGGATGCATTCCTCTTCACCGGTTAGCAGTGGAACTCCTGCGCCGGCGCCTACCTCAAATGGTGAAAGCACAGAGGCTCCAACGCCACAAGATCGATATTGTGTTGACTGCGATATACCTTTTAGTTCAGTAAAAACGTATCGCGCACATAAAGCTCATTACTGCAATACAAGGCAAGTTGTCAAACAAGTATTAGCCGCTGCCAGAGGAGGCTCCGCCACATCCGGTTCTGCACCTCCGTCTCCCGGAGCAACTCCTCCATCTCAAAACCAATATGCTATTGCGTTACCTACAAATCCCATACTTATAGTTCCATATTCTATACTACGAAGCGCCAGCACTCTTCCGGGTGCAACATTACCAGACCCAGATACCCCATGCTTTTTGTTACCAAATGGAACTTTTCAACCTATAACTCGAGgcttattaaatatgaatacgGAAGGGAAGGAACCAGAGGTGCTAAAAGCTGCAAACCGACGGTGTGAACCGTCACGAGACGGCGCCACACCATTGGATTTGAGTGTGCGCCGGTCTCCCGAGTCTGTAACAACTGATGATCACGAGAAAGAAAATAGAATACGATCAGCGACACCGGAACAAATTGTCTGCGCACCATCTCTTCCCGGTTCACCGGGAACACCGTCACCTTTAAGACGATCGTCGTCACCTAGCGCGGAAAGTTCGCCAAAGAGACGGCGGCGCAATTCAAGAGGTCCCACACCGAAACCTCCTAGTGTACCTTCACCGCCAGAAGAAAAATTCGCTCCAGTTGTACCCCCGCCGATCTTGCCACCGGCGCTTGCCTTGCGACTTGCTTCCGAGTTACCTGTTACCGCTACGTCACCCCAAGTTTTAGTGAAGCAAGGCCCTTCGAAATGCAAGGAATGCAATATTGTATTTTGCAAATACGAAAACTATCGTGTACACAAACGGCACTACTGCTCGGCTGGTGGCGGAGAAGAGAGAGAGAGTCCTGCTCCGCCTGAGCTCGGTCCGCCTACGCAATACCGACAGCTCATTTGCATGGCGTGCGGTATACACTTCAGTTCACTAGACAACCTTACTACCCATCAGTCCTTCTATTGCACGAAACGGGAAACGCGATCTCCACGAAGCATTCCCGAAGTACCTCGACCGTCGTCGGGATCAGAAGGAGGATGGAAATGTCCTTGCTGCGACGTGGTATCCCCCACAGCAGCAGCGGCTCAACGCCACATGGAAACGCACGCGGGTGTCAAAGCCTTCCGCTGTACCATCTGCCGGTACAGAGGGAACACGCTGCGAGGCATGCGCACTCATATACGCATGCACTTTAGAGAAAAACCGTCTGATTTGCagGAGGAGAGCTATATCGCATGCGTTGTTGAAGAGGATAATCGCGAAGCGACGTCTCCCAGTCCAGCGTTGGGCGGAGACCGGGTCCACCGGTGCGGGAGCTGCGCCTACACCTCCACGTACCGTGGCAACGTGGTGAGGCACGCGAGGCTGGTCCACGCGACAGAAAACCCAGAACCGGAAGAGCAAACCTCACCCATCCCTCCGGCGGACATCAAAAAAGAACTAGAGCCGGAAGCGGAAGAAACACCAAACTACTGCAAATCGTGTAACATATCTTTCCAGTACGTGAACACGTACAAAGCTCACAAGCAGTTCTATTGCAGCGGTGCGAACCAGGACGCGGCCGCCAACAACAACGTGCCGCCGCCGCGGGTCAACGACGCGCCGATACTGTGA
Protein Sequence: MPGEPRTPSSGGERAASSRDASPASEGSLVASPPRLRLNASLATDPALAPQATSLKHEPPSPSPPPPPAPQTRENIALSAAAAFPSLFPVTAAPGYTCQPCGIRYSSLSTLQAHQEHYCSKRRPKPDSTDGPTDAADDSSSEAKTPRPPGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPAPTSNGESTEAPTPQDRYCVDCDIPFSSVKTYRAHKAHYCNTRQVVKQVLAAARGGSATSGSAPPSPGATPPSQNQYAIALPTNPILIVPYSILRSASTLPGATLPDPDTPCFLLPNGTFQPITRGLLNMNTEGKEPEVLKAANRRCEPSRDGATPLDLSVRRSPESVTTDDHEKENRIRSATPEQIVCAPSLPGSPGTPSPLRRSSSPSAESSPKRRRRNSRGPTPKPPSVPSPPEEKFAPVVPPPILPPALALRLASELPVTATSPQVLVKQGPSKCKECNIVFCKYENYRVHKRHYCSAGGGEERESPAPPELGPPTQYRQLICMACGIHFSSLDNLTTHQSFYCTKRETRSPRSIPEVPRPSSGSEGGWKCPCCDVVSPTAAAAQRHMETHAGVKAFRCTICRYRGNTLRGMRTHIRMHFREKPSDLQEESYIACVVEEDNREATSPSPALGGDRVHRCGSCAYTSTYRGNVVRHARLVHATENPEPEEQTSPIPPADIKKELEPEAEETPNYCKSCNISFQYVNTYKAHKQFYCSGANQDAAANNNVPPPRVNDAPIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00288432;
80% Identity: -