Pahi013468.1
Basic Information
- Insect
- Parelbella ahira
- Gene Symbol
- -
- Assembly
- GCA_018244795.1
- Location
- DWME01011819.1:6427-9371[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 7.1 7.9 0.4 5 23 309 327 308 327 0.95 2 11 0.0063 0.45 11.7 0.4 3 23 335 355 333 355 0.94 3 11 2.8 2e+02 3.4 0.3 2 23 363 384 362 384 0.87 4 11 3.9e-06 0.00028 21.8 1.4 2 23 389 410 389 410 0.98 5 11 0.0035 0.25 12.5 4.1 1 23 416 438 416 438 0.99 6 11 0.0027 0.19 12.9 0.1 1 21 442 462 442 463 0.93 7 11 5.3e-05 0.0038 18.2 0.1 1 23 496 519 496 519 0.96 8 11 3.8e-05 0.0027 18.7 0.3 1 23 541 563 541 563 0.98 9 11 5.3e-05 0.0038 18.2 4.3 1 23 569 591 569 591 0.98 10 11 0.0029 0.21 12.8 0.3 3 23 599 619 597 619 0.98 11 11 1.1e-05 0.0008 20.3 0.7 1 23 625 648 625 648 0.96
Sequence Information
- Coding Sequence
- GTGAATGAAGAGGATGGGTTGCCACAGAAACTTTGTGTGGAATGTTTCACCGTACTAAATTCAGCATATCAATTCAGAGTGCAGTGTATGAAGATGGACAAAGAACTCAAACTTCAACTGGATAGCTTGTTGAAGCATACTCGAGAAGACCAGTATGTACTAGATTTGCCTGATGTCATTGAGAAAGGTAAGGAATTAACAGTAGAAGATATAGACAAAGAATCTATGAAACAAATTGAAGCAATGATTAAAACTGAACCGAATGACAGTGATGACGAATGCTATTATGTACTAGTAATTGATAATGAAAAGGACCAAAAAACAGATGTGCCAAGTATAAAAATGGAACCTATAGATGATCCTCATATAGAAGACACCCACGATCGGTCCTTAGAAAAAACTCCACGTTTCGATAATAGCATAGATTCATTCCTAGTTTCAAATCCTAGAATACCACTAAATGTACCTGCGACTATACTTCAAAATGAAGAGGAATACCAAGAAAATGATGACAAAACTAGCTTAAACATAGCTGAAGAAGTTGATGAAACATCTCAAGAACATATTGTCACTGAAATTGATGATGCTCAACTTCGGAACAGCCAAGAACTGGTGACTATGTGTGATGATATCATAGTTAAAGATATGacaaattctaataatattatcaaaatattaacatctgGAGTAGAGCGAACAATACTACTTAACAGTAAGGAAGGTGTGAAGTATCTAACAGATGCTCAACTTGGTGCTGAGGATGAAGAATCTAGTACTCAACAAGAGTTGATATTCTATGAAGGTGATGAATCATCTCAATTTCAAATACTGAAGTGTGATGGTTCCGAGTTAGTAATAGAATATGCTGACGATAGCCAGATAGCGACTGAAGTTTTACAACAAGAAGATGGCACATATTTATGTGAGTGTGGTGAAAAATTTGTAGATCTACAGGAGTATGAAAAGCATAAATATAAGCATAATCCTGCCGGTGAGCACTTGTGCAATCTCTGTGGAAAAGGCTTTGAGACATCGGAGATCCTAACGGGGCATATGCTTTTACACAGTGTTACTGGACTCTTTGTGACATGTCCATTCTGCAGTCAACTAATAAGAAGGAATGCCCTCACACAACATATCAAATATGGTCACAATCATAAGCCTCGTTGCAACATATGCATGAAAACATTTGCCAaccaaaataatttgaaacgtCACATGATGATACACACTGGTGTGAGAGATTTTCAATGTGATATCTGTTTAAAGAGATTCCATCAAAAGATTACGATGCAGACACATAGGCTAACACACATCAATCCATTTGCCTGTAATCTATGTGACTTAACTTTTGAAAGCAAAGCTGCATTAGTAACTCATAAGCAATCTGACCAGTGTTCCAAAAGTAAAGTGAATAAATTTAAGGAAGAATTAGTTAAGACTGTTAAACAGGAAATCACAACGGACATGGGCAAACTCTTAGGTTATGCTTGCTCTATTTGTAAACGAATGTTCTCAGTAGAGTCTGCATTAGAACAACATATAGAGAGCAATCATATGGTGGAGCCAAGTGATGTGGCTAATCAAGATAAGAACTTGAGAGTGAAAAATCTAAAGAGATTCGAGTGTAGTATATGTGGTAAGAACTGTGCTAGTCAAGCTATGCTTATAATGCATGAGCGTGTCCACACTAACGAGCGGCCATACCCGTGTCAGCTGTGTTCACTGCGTTTCAAAACTAAAACACATTTGCGAACGCACCAACTCACACATACCAGAGAAAAGAAGTTTGGATGTTCTGTCTGTATGAAGTTTTTTGCTTTGAAAGGCAACTTAGTAGTACATTTGCGGACTCATACTGGAGAACGACCATATGTCTGTTCCGTTTGTGGAGAAGCATTTATAGATTCTAAATATCTCAAGAAGCATAAGTTAAAGAAGCATTCAACAGATATTCCTTGGGACAAGTATAGTTGA
- Protein Sequence
- VNEEDGLPQKLCVECFTVLNSAYQFRVQCMKMDKELKLQLDSLLKHTREDQYVLDLPDVIEKGKELTVEDIDKESMKQIEAMIKTEPNDSDDECYYVLVIDNEKDQKTDVPSIKMEPIDDPHIEDTHDRSLEKTPRFDNSIDSFLVSNPRIPLNVPATILQNEEEYQENDDKTSLNIAEEVDETSQEHIVTEIDDAQLRNSQELVTMCDDIIVKDMTNSNNIIKILTSGVERTILLNSKEGVKYLTDAQLGAEDEESSTQQELIFYEGDESSQFQILKCDGSELVIEYADDSQIATEVLQQEDGTYLCECGEKFVDLQEYEKHKYKHNPAGEHLCNLCGKGFETSEILTGHMLLHSVTGLFVTCPFCSQLIRRNALTQHIKYGHNHKPRCNICMKTFANQNNLKRHMMIHTGVRDFQCDICLKRFHQKITMQTHRLTHINPFACNLCDLTFESKAALVTHKQSDQCSKSKVNKFKEELVKTVKQEITTDMGKLLGYACSICKRMFSVESALEQHIESNHMVEPSDVANQDKNLRVKNLKRFECSICGKNCASQAMLIMHERVHTNERPYPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSVCGEAFIDSKYLKKHKLKKHSTDIPWDKYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00025421;
- 90% Identity
- -
- 80% Identity
- -